miRNA display CGI


Results 101 - 120 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 15937 0.66 0.839231
Target:  5'- gUCGcCuGCGGCAGCGGGgcCGCgCUGAUGc -3'
miRNA:   3'- -AGUuGuCGCUGUCGCUC--GCG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 16031 0.68 0.76342
Target:  5'- cCAGCAGCuucuucgccuucuugGGCAGCGGGCccGCgCCGAg- -3'
miRNA:   3'- aGUUGUCG---------------CUGUCGCUCG--CG-GGCUgc -5'
23582 3' -57.5 NC_005261.1 + 16431 0.66 0.84725
Target:  5'- cUCGACGGCgGGCGGCG-GCucguaGCCCuuCGa -3'
miRNA:   3'- -AGUUGUCG-CUGUCGCuCG-----CGGGcuGC- -5'
23582 3' -57.5 NC_005261.1 + 16602 0.67 0.796503
Target:  5'- cCGGCGGCGGCcGcCGAGCGgCgggaGGCGg -3'
miRNA:   3'- aGUUGUCGCUGuC-GCUCGCgGg---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 16651 0.67 0.805374
Target:  5'- cCGAgGGCGAgAGCGAGgccucgucccCGCCCuucgccgagGACGg -3'
miRNA:   3'- aGUUgUCGCUgUCGCUC----------GCGGG---------CUGC- -5'
23582 3' -57.5 NC_005261.1 + 16702 0.7 0.620381
Target:  5'- cCGACAGCGACgAG-GAGCucGCCauCGACGg -3'
miRNA:   3'- aGUUGUCGCUG-UCgCUCG--CGG--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 16943 0.68 0.71114
Target:  5'- -gGACGGgGACgagAGCGAG-GCCgGGCGg -3'
miRNA:   3'- agUUGUCgCUG---UCGCUCgCGGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 17127 0.66 0.81409
Target:  5'- -----cGCGGCGGCGGGUaCgCCGGCGg -3'
miRNA:   3'- aguuguCGCUGUCGCUCGcG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 17196 0.69 0.691211
Target:  5'- gCGGCGGCGAgCAGC--GCGCCCaGCa -3'
miRNA:   3'- aGUUGUCGCU-GUCGcuCGCGGGcUGc -5'
23582 3' -57.5 NC_005261.1 + 17261 0.71 0.559885
Target:  5'- gCAACcGCGcAgAGCGAGUgcacccccgaccGCCCGACGa -3'
miRNA:   3'- aGUUGuCGC-UgUCGCUCG------------CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 17264 0.7 0.591008
Target:  5'- --uGCGGCGGCAcgcgccccgcggggcGCGAgccuccaccuucccGCGCCCGGCGc -3'
miRNA:   3'- aguUGUCGCUGU---------------CGCU--------------CGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 17566 0.7 0.600105
Target:  5'- uUCGGCGGUGGCcuuGCGGGCGagCUGGCa -3'
miRNA:   3'- -AGUUGUCGCUGu--CGCUCGCg-GGCUGc -5'
23582 3' -57.5 NC_005261.1 + 17730 0.66 0.839231
Target:  5'- -gGGCAGCGGCGcCGGGUaGCCgGugGc -3'
miRNA:   3'- agUUGUCGCUGUcGCUCG-CGGgCugC- -5'
23582 3' -57.5 NC_005261.1 + 17909 0.72 0.481207
Target:  5'- gCGACGGCGccgauuaGCAGCGAGUcggGCCCGcugGCGu -3'
miRNA:   3'- aGUUGUCGC-------UGUCGCUCG---CGGGC---UGC- -5'
23582 3' -57.5 NC_005261.1 + 18269 0.72 0.520449
Target:  5'- cUCGACGGaGACGGCGGGUGCgCGguACGu -3'
miRNA:   3'- -AGUUGUCgCUGUCGCUCGCGgGC--UGC- -5'
23582 3' -57.5 NC_005261.1 + 18737 0.66 0.822644
Target:  5'- gUUGGCgGGCGGCGGCGccGGCGUCCccaagGGCGu -3'
miRNA:   3'- -AGUUG-UCGCUGUCGC--UCGCGGG-----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 18778 0.74 0.401469
Target:  5'- gCAACAGCaGCGGCGAGgGUgCCGGCu -3'
miRNA:   3'- aGUUGUCGcUGUCGCUCgCG-GGCUGc -5'
23582 3' -57.5 NC_005261.1 + 18919 0.68 0.759645
Target:  5'- gCAAgGGCGAgGGCGAGgccuCGCCCuccgcuuccucGGCGa -3'
miRNA:   3'- aGUUgUCGCUgUCGCUC----GCGGG-----------CUGC- -5'
23582 3' -57.5 NC_005261.1 + 19301 0.69 0.660977
Target:  5'- cCAGCcGCG-CGGCGccGCGCCCG-CGg -3'
miRNA:   3'- aGUUGuCGCuGUCGCu-CGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 19404 0.68 0.759645
Target:  5'- gCAG-AGCGGCAGUGccGCGCCCagGGCGc -3'
miRNA:   3'- aGUUgUCGCUGUCGCu-CGCGGG--CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.