miRNA display CGI


Results 21 - 40 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 134774 0.68 0.75013
Target:  5'- cUCGACGcGCGGCgcGGCGGcccgcGCGCCCGcCu -3'
miRNA:   3'- -AGUUGU-CGCUG--UCGCU-----CGCGGGCuGc -5'
23582 3' -57.5 NC_005261.1 + 134700 0.73 0.463513
Target:  5'- gCGACuGCGACcGCGGcGCGCCCaGACc -3'
miRNA:   3'- aGUUGuCGCUGuCGCU-CGCGGG-CUGc -5'
23582 3' -57.5 NC_005261.1 + 134516 0.66 0.855078
Target:  5'- cCGGCAGCGGCGcGUcuGAGCuCCCGGu- -3'
miRNA:   3'- aGUUGUCGCUGU-CG--CUCGcGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 134422 0.67 0.778332
Target:  5'- gCGGCAGCG-C-GCGAGCGgCUGcGCGa -3'
miRNA:   3'- aGUUGUCGCuGuCGCUCGCgGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 134385 0.68 0.740513
Target:  5'- --cGCGGCGcCGGCGccgcugccgccAGCGCCCGGg- -3'
miRNA:   3'- aguUGUCGCuGUCGC-----------UCGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 134324 0.75 0.344971
Target:  5'- gCGcCGGCGGC-GCGGGCGCCCG-CGc -3'
miRNA:   3'- aGUuGUCGCUGuCGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 134228 0.72 0.510756
Target:  5'- cCGGCAGCGuCGGCGuggcgcacGCGCCCuGCGc -3'
miRNA:   3'- aGUUGUCGCuGUCGCu-------CGCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 134097 0.66 0.839231
Target:  5'- cUCGGC-GCGcCGGCGcGCGCUCGcCGc -3'
miRNA:   3'- -AGUUGuCGCuGUCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 133935 0.7 0.640693
Target:  5'- --cGCGGCGGCcGCGGG-GCCCG-CGg -3'
miRNA:   3'- aguUGUCGCUGuCGCUCgCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 133829 0.66 0.850405
Target:  5'- cCGGCAGCGcgccgccgccgcccgGCcGCGuGCGCUuCGGCGg -3'
miRNA:   3'- aGUUGUCGC---------------UGuCGCuCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 133813 0.75 0.340402
Target:  5'- cUCGACGGCGACGaggcgcugcgcggccGCGuGCGCgCCGugGc -3'
miRNA:   3'- -AGUUGUCGCUGU---------------CGCuCGCG-GGCugC- -5'
23582 3' -57.5 NC_005261.1 + 133296 0.69 0.68117
Target:  5'- -gGGCcGCGGC-GCGGGCGCUCG-CGg -3'
miRNA:   3'- agUUGuCGCUGuCGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 133103 0.67 0.787487
Target:  5'- --cGCgAGCGcCGGCGGGcCGCCCG-CGc -3'
miRNA:   3'- aguUG-UCGCuGUCGCUC-GCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 132477 0.67 0.805374
Target:  5'- cCGGCAGCGcCucgccguccuGgGAcGCGCCCGACc -3'
miRNA:   3'- aGUUGUCGCuGu---------CgCU-CGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 132175 0.68 0.71114
Target:  5'- -aGGCAGCGcgGGCGGGgGCCCG-Ca -3'
miRNA:   3'- agUUGUCGCugUCGCUCgCGGGCuGc -5'
23582 3' -57.5 NC_005261.1 + 132100 0.72 0.482148
Target:  5'- -gGAgGGCGGCcGCGAcGCGCUCGugGa -3'
miRNA:   3'- agUUgUCGCUGuCGCU-CGCGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 131960 0.67 0.769049
Target:  5'- aCAAUgAGUuuGGCGGCGGGcCGCCCcGCGg -3'
miRNA:   3'- aGUUG-UCG--CUGUCGCUC-GCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 131774 0.66 0.855078
Target:  5'- -gGGCGGgGuguGCGGGCaGCCCGGCc -3'
miRNA:   3'- agUUGUCgCuguCGCUCG-CGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 131762 0.71 0.559885
Target:  5'- cCGGcCGGCG-CGGCGGGCGCgccgcugggccCCGACGc -3'
miRNA:   3'- aGUU-GUCGCuGUCGCUCGCG-----------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 131425 0.69 0.671089
Target:  5'- cCGGCAGCGGC-GCcGGCGCCCcccuuGCGc -3'
miRNA:   3'- aGUUGUCGCUGuCGcUCGCGGGc----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.