miRNA display CGI


Results 41 - 60 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 130627 0.71 0.549938
Target:  5'- uUCAACAGCGcgcgggGCGcGCGuGCGCucgCCGACGc -3'
miRNA:   3'- -AGUUGUCGC------UGU-CGCuCGCG---GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 130608 0.68 0.75013
Target:  5'- gCAGCGGCGGCAGCaGAggcagauccaGCGgCCGGg- -3'
miRNA:   3'- aGUUGUCGCUGUCG-CU----------CGCgGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 130479 0.74 0.409149
Target:  5'- --cGCGGCGugccucgGCGGCGAGgGcCCCGACGa -3'
miRNA:   3'- aguUGUCGC-------UGUCGCUCgC-GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 129759 0.69 0.68117
Target:  5'- uUCAGCaccGGCGACcGcCGGGCucgGCCCGGCc -3'
miRNA:   3'- -AGUUG---UCGCUGuC-GCUCG---CGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 129732 0.77 0.274579
Target:  5'- gCAGCGGCagGGCGGCGGG-GCCCGGCc -3'
miRNA:   3'- aGUUGUCG--CUGUCGCUCgCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 129654 0.73 0.469993
Target:  5'- gCGGCGGCGGCGGCaggggcgggaccggGGGCGUCgCGACu -3'
miRNA:   3'- aGUUGUCGCUGUCG--------------CUCGCGG-GCUGc -5'
23582 3' -57.5 NC_005261.1 + 129606 0.66 0.839231
Target:  5'- gCGGCAauuucGCGGCGGgguCGGGCGCCUuugcaGGCGg -3'
miRNA:   3'- aGUUGU-----CGCUGUC---GCUCGCGGG-----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 128656 0.7 0.620381
Target:  5'- aCAugAG-GGCGGCu-GCGCCUGGCGg -3'
miRNA:   3'- aGUugUCgCUGUCGcuCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 128505 0.69 0.701204
Target:  5'- cUCGAC-GCGGCGGCGgaGGCaGCCUccuGGCGg -3'
miRNA:   3'- -AGUUGuCGCUGUCGC--UCG-CGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 128190 0.69 0.650842
Target:  5'- gUCG--GGCcgGugAGCGAGCGCCCccGACGc -3'
miRNA:   3'- -AGUugUCG--CugUCGCUCGCGGG--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 127993 0.71 0.579921
Target:  5'- gCGGCGGCGAguGCGcGgGCCCGcCu -3'
miRNA:   3'- aGUUGUCGCUguCGCuCgCGGGCuGc -5'
23582 3' -57.5 NC_005261.1 + 127850 0.66 0.831027
Target:  5'- cCGACgAGCGcGCGGCGcAGCGCgCG-CGu -3'
miRNA:   3'- aGUUG-UCGC-UGUCGC-UCGCGgGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 127803 0.71 0.579921
Target:  5'- cCGGCGccGCGGCGGCGGGCcGCUCG-CGc -3'
miRNA:   3'- aGUUGU--CGCUGUCGCUCG-CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 127788 0.7 0.610235
Target:  5'- gCAGCAGCGccuccCAGCacGCGUCCGugGg -3'
miRNA:   3'- aGUUGUCGCu----GUCGcuCGCGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 127744 0.71 0.549938
Target:  5'- cUUGGCGGCGGgAGCGGGC-CgCGGCGg -3'
miRNA:   3'- -AGUUGUCGCUgUCGCUCGcGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 127699 0.84 0.103595
Target:  5'- cCGGgGGCGACAGCGAGCGCgCCG-CGg -3'
miRNA:   3'- aGUUgUCGCUGUCGCUCGCG-GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 127678 0.73 0.42742
Target:  5'- -gGACGGCGGCGGCcgcuGC-CCCGGCGg -3'
miRNA:   3'- agUUGUCGCUGUCGcu--CGcGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 127638 0.73 0.472784
Target:  5'- gCGACGGCGGCGGCGccggggGGCGCgCGGg- -3'
miRNA:   3'- aGUUGUCGCUGUCGC------UCGCGgGCUgc -5'
23582 3' -57.5 NC_005261.1 + 127379 0.81 0.148682
Target:  5'- gUCGuuGGCGGCGGCGAGgaGCCCGGCGc -3'
miRNA:   3'- -AGUugUCGCUGUCGCUCg-CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 127271 0.7 0.639677
Target:  5'- gCGGCGGCGGCccacgcgucugggGGCGGGC-CCCG-CGa -3'
miRNA:   3'- aGUUGUCGCUG-------------UCGCUCGcGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.