miRNA display CGI


Results 61 - 80 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 127176 0.68 0.730803
Target:  5'- -uGGCGGCGcCugGGCG-GCGCCCGAg- -3'
miRNA:   3'- agUUGUCGCuG--UCGCuCGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 127101 0.66 0.855078
Target:  5'- -gAGCGGCGGaGGCG-GCGCacgcugCCGGCGc -3'
miRNA:   3'- agUUGUCGCUgUCGCuCGCG------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 127046 0.68 0.759645
Target:  5'- aCAACAacGCGACGGaGGGCcgggGCCgCGGCGa -3'
miRNA:   3'- aGUUGU--CGCUGUCgCUCG----CGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 126934 0.77 0.274579
Target:  5'- cCAGCAGCG-CGGCcagGGGCGCCgGGCGc -3'
miRNA:   3'- aGUUGUCGCuGUCG---CUCGCGGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 126590 0.66 0.855078
Target:  5'- cCGGCGG-GGCucgAGgGGGCGCCgCGugGg -3'
miRNA:   3'- aGUUGUCgCUG---UCgCUCGCGG-GCugC- -5'
23582 3' -57.5 NC_005261.1 + 126256 0.72 0.482148
Target:  5'- aUCGACAcGCGGCugcugcgccuggAGCGcGCGCCgGGCGa -3'
miRNA:   3'- -AGUUGU-CGCUG------------UCGCuCGCGGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 126212 0.71 0.569882
Target:  5'- ---cCAGCGGCAGCcccAGCuCCCGACGc -3'
miRNA:   3'- aguuGUCGCUGUCGc--UCGcGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 126097 0.74 0.393045
Target:  5'- gCGGCcgccGCGGCGGCGGGCGCCauccuGGCGc -3'
miRNA:   3'- aGUUGu---CGCUGUCGCUCGCGGg----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 126021 0.77 0.274579
Target:  5'- gCAGCAGCGGCGGCG-GCa-CCGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGcgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 125972 0.77 0.28768
Target:  5'- gCGAgAGCGACAGCGAGaCGgCgGGCGa -3'
miRNA:   3'- aGUUgUCGCUGUCGCUC-GCgGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 125893 0.75 0.352683
Target:  5'- gCGGCGGCGGCcgcgccggccaAGCGcGCGCCCGcCGg -3'
miRNA:   3'- aGUUGUCGCUG-----------UCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 125871 0.66 0.839231
Target:  5'- cUCGGCcGgGGCGGCGcccuuggcugaaGGCGCCUGAg- -3'
miRNA:   3'- -AGUUGuCgCUGUCGC------------UCGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 125708 0.73 0.472784
Target:  5'- uUCGGCGGCGGC-GCGGG-GCCCcGCGc -3'
miRNA:   3'- -AGUUGUCGCUGuCGCUCgCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 125432 0.7 0.589998
Target:  5'- aCGGCAGCGACGccgacGaCGAGCuCgCCGACGa -3'
miRNA:   3'- aGUUGUCGCUGU-----C-GCUCGcG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 125379 0.7 0.600105
Target:  5'- gUCGGuCAGCGACGaCGAGUucuucCCCGACGa -3'
miRNA:   3'- -AGUU-GUCGCUGUcGCUCGc----GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 125159 0.72 0.520449
Target:  5'- cCGACGG-GcCGGCGGacGCGCCCGGCa -3'
miRNA:   3'- aGUUGUCgCuGUCGCU--CGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 124582 0.66 0.822644
Target:  5'- gCGGCGGCGGCacGGCGcGCGCuuCCG-CGu -3'
miRNA:   3'- aGUUGUCGCUG--UCGCuCGCG--GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 123949 0.67 0.805374
Target:  5'- --uACAGC--CAGCGcAGCGCCCGcuccGCGa -3'
miRNA:   3'- aguUGUCGcuGUCGC-UCGCGGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 123504 0.67 0.769049
Target:  5'- gCAcCAGCGGCAGUGccGCGUCCGcuaGCa -3'
miRNA:   3'- aGUuGUCGCUGUCGCu-CGCGGGC---UGc -5'
23582 3' -57.5 NC_005261.1 + 123159 0.69 0.701204
Target:  5'- aCGAgGGCGG-GGCGGGCGCgCgGGCGu -3'
miRNA:   3'- aGUUgUCGCUgUCGCUCGCG-GgCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.