miRNA display CGI


Results 81 - 100 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 123042 0.66 0.831027
Target:  5'- gCGAUGGCGGCGuuucccGCGGGCGCcgCCGcCGc -3'
miRNA:   3'- aGUUGUCGCUGU------CGCUCGCG--GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 122947 0.66 0.822644
Target:  5'- -aGGCcGCGACcGCGcGC-CCCGGCGg -3'
miRNA:   3'- agUUGuCGCUGuCGCuCGcGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 122850 0.73 0.436288
Target:  5'- aUCGACGGCGGCGcCGAGgGCgCCGAgCGc -3'
miRNA:   3'- -AGUUGUCGCUGUcGCUCgCG-GGCU-GC- -5'
23582 3' -57.5 NC_005261.1 + 122750 0.67 0.805374
Target:  5'- gCAGCAGCGGCGcGUGucCGCCgCGGuCGa -3'
miRNA:   3'- aGUUGUCGCUGU-CGCucGCGG-GCU-GC- -5'
23582 3' -57.5 NC_005261.1 + 122630 0.74 0.393045
Target:  5'- -gAACGGCGAgcGCGAG-GCCCGGCGc -3'
miRNA:   3'- agUUGUCGCUguCGCUCgCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 122432 0.66 0.820095
Target:  5'- ----gGGUGGCGGCGcuggccgcgcgggcGGCGCCCGccaGCGg -3'
miRNA:   3'- aguugUCGCUGUCGC--------------UCGCGGGC---UGC- -5'
23582 3' -57.5 NC_005261.1 + 121947 0.71 0.579921
Target:  5'- cCGACGGCGcCcccccgGGCGAGCcgaaGCCCGGCc -3'
miRNA:   3'- aGUUGUCGCuG------UCGCUCG----CGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 121911 0.8 0.181888
Target:  5'- cCGGCGGCGAgGGgGAGgGCCCGGCc -3'
miRNA:   3'- aGUUGUCGCUgUCgCUCgCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 121845 0.71 0.569882
Target:  5'- gCGACGaCGACGGCGAG-GCCC-ACGg -3'
miRNA:   3'- aGUUGUcGCUGUCGCUCgCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 121838 0.67 0.769049
Target:  5'- gCGGCGGCGcacCGGCGccAGCaGCCCG-CGg -3'
miRNA:   3'- aGUUGUCGCu--GUCGC--UCG-CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 121635 0.68 0.759645
Target:  5'- cUCGGCGGCcgccgcCGGCGAGCGCgggcuguccgcgUCGGCGu -3'
miRNA:   3'- -AGUUGUCGcu----GUCGCUCGCG------------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 121389 0.7 0.589998
Target:  5'- --cGCGGCGGCGGCGccUGCCCGAg- -3'
miRNA:   3'- aguUGUCGCUGUCGCucGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 120901 0.67 0.80007
Target:  5'- --uACAGCGACgugaccAucuccaucucgauccGCGAGCGCCgGGCGc -3'
miRNA:   3'- aguUGUCGCUG------U---------------CGCUCGCGGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 120364 0.66 0.855078
Target:  5'- -gGACGgugcGCGACGGCGccGCGCCCucGCGc -3'
miRNA:   3'- agUUGU----CGCUGUCGCu-CGCGGGc-UGC- -5'
23582 3' -57.5 NC_005261.1 + 119882 0.67 0.778332
Target:  5'- --cGCAGcCGAgGGCGuguacaccuGGCGCCgCGACGc -3'
miRNA:   3'- aguUGUC-GCUgUCGC---------UCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 119645 0.67 0.805374
Target:  5'- aCAACGccacCGGCGGCGcGCGCCUGGa- -3'
miRNA:   3'- aGUUGUc---GCUGUCGCuCGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 119465 0.69 0.701204
Target:  5'- aCAGCA-CGACGGaCGAGaCGCCCuugggGACGc -3'
miRNA:   3'- aGUUGUcGCUGUC-GCUC-GCGGG-----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 119032 0.73 0.453426
Target:  5'- gCAGCgggccugGGCGAaGGCGAcuGCGCCCGGCa -3'
miRNA:   3'- aGUUG-------UCGCUgUCGCU--CGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 118844 0.68 0.71114
Target:  5'- cUCuGCGGCgcgGAgGGCGGcGCGCCCG-CGg -3'
miRNA:   3'- -AGuUGUCG---CUgUCGCU-CGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 118466 0.69 0.671089
Target:  5'- uUCGA-GGCGACGGgGcccGCGCCCGcGCGg -3'
miRNA:   3'- -AGUUgUCGCUGUCgCu--CGCGGGC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.