miRNA display CGI


Results 41 - 60 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 121911 0.8 0.181888
Target:  5'- cCGGCGGCGAgGGgGAGgGCCCGGCc -3'
miRNA:   3'- aGUUGUCGCUgUCgCUCgCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 43623 0.81 0.160433
Target:  5'- gCGGCGGCGAgGGCGcGCGCUCGugGg -3'
miRNA:   3'- aGUUGUCGCUgUCGCuCGCGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 38144 0.81 0.152509
Target:  5'- gCAGCGGCGGCGGCGAggggcgcggcGCGCCCccgGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCU----------CGCGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 33055 0.81 0.148682
Target:  5'- --cGCGGCGGCGGCGGGC-CCCGugGa -3'
miRNA:   3'- aguUGUCGCUGUCGCUCGcGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 85893 0.83 0.121085
Target:  5'- gCGGCAGCG-CGGCGGGCGCCaagGACGg -3'
miRNA:   3'- aGUUGUCGCuGUCGCUCGCGGg--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 115415 0.78 0.243923
Target:  5'- cCAACGGCGGCGGCGgcAGCGCCgccgccggccgCGACa -3'
miRNA:   3'- aGUUGUCGCUGUCGC--UCGCGG-----------GCUGc -5'
23582 3' -57.5 NC_005261.1 + 13017 0.78 0.243923
Target:  5'- aUCGACGGCGauaGCAGCGAcaGCGC-CGACGa -3'
miRNA:   3'- -AGUUGUCGC---UGUCGCU--CGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 28224 0.76 0.294413
Target:  5'- aCGGCGGCGcCGGCGGGCGUguccaCGACGa -3'
miRNA:   3'- aGUUGUCGCuGUCGCUCGCGg----GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 85534 0.76 0.294413
Target:  5'- uUCAuCGGcCGGCAGCGGcGCGCCCG-CGa -3'
miRNA:   3'- -AGUuGUC-GCUGUCGCU-CGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 125972 0.77 0.28768
Target:  5'- gCGAgAGCGACAGCGAGaCGgCgGGCGa -3'
miRNA:   3'- aGUUgUCGCUGUCGCUC-GCgGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 19813 0.77 0.286348
Target:  5'- gCGGCGGCGACAGCcagcgcggcugcGGCGCCCG-CGg -3'
miRNA:   3'- aGUUGUCGCUGUCGc-----------UCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 110063 0.77 0.281069
Target:  5'- --cGCAGCGAgaCGGgGGGCGCCCGAgCGg -3'
miRNA:   3'- aguUGUCGCU--GUCgCUCGCGGGCU-GC- -5'
23582 3' -57.5 NC_005261.1 + 98624 0.77 0.281069
Target:  5'- gCGACGGgGGCGGCGggggcgcgcGGCGCUCGGCGc -3'
miRNA:   3'- aGUUGUCgCUGUCGC---------UCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 82857 0.77 0.281069
Target:  5'- gCGGCAGCGGCGGCGGGCcagGCUgGGCc -3'
miRNA:   3'- aGUUGUCGCUGUCGCUCG---CGGgCUGc -5'
23582 3' -57.5 NC_005261.1 + 30540 0.77 0.281069
Target:  5'- uUCGGCGGCGcccccgccGCGGCGGcaaCGCCCGGCGg -3'
miRNA:   3'- -AGUUGUCGC--------UGUCGCUc--GCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 35537 0.77 0.274579
Target:  5'- -aGACGGCGGCAGCGAcgGCCgCGGCGg -3'
miRNA:   3'- agUUGUCGCUGUCGCUcgCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 126021 0.77 0.274579
Target:  5'- gCAGCAGCGGCGGCG-GCa-CCGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGcgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 108978 0.77 0.261961
Target:  5'- cCAGCGGCGGCGGCccgucgcgcGGCGCCgCGGCGu -3'
miRNA:   3'- aGUUGUCGCUGUCGc--------UCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 78878 0.78 0.249818
Target:  5'- gCGACacccucguGGCGACGGCG-GCGaCCCGGCGg -3'
miRNA:   3'- aGUUG--------UCGCUGUCGCuCGC-GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 82255 0.78 0.243923
Target:  5'- cCGAUGGCGACGGCG-GCGCUCG-CGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGCGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.