Results 61 - 80 of 794 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 126021 | 0.77 | 0.274579 |
Target: 5'- gCAGCAGCGGCGGCG-GCa-CCGGCGg -3' miRNA: 3'- aGUUGUCGCUGUCGCuCGcgGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 35537 | 0.77 | 0.274579 |
Target: 5'- -aGACGGCGGCAGCGAcgGCCgCGGCGg -3' miRNA: 3'- agUUGUCGCUGUCGCUcgCGG-GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 70924 | 0.76 | 0.301267 |
Target: 5'- gCGGCGGcCGACGGCGGcgcGCGCgCGGCGg -3' miRNA: 3'- aGUUGUC-GCUGUCGCU---CGCGgGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 109426 | 0.76 | 0.304043 |
Target: 5'- uUCGGCGGCGgcugccuccgccgcgGCcGCGAGCGCCCGcgccGCGg -3' miRNA: 3'- -AGUUGUCGC---------------UGuCGCUCGCGGGC----UGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 35299 | 0.76 | 0.308244 |
Target: 5'- gCAGCGGCGGCGGCGcuGCGCgaagCGGCGg -3' miRNA: 3'- aGUUGUCGCUGUCGCu-CGCGg---GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 44420 | 0.76 | 0.308244 |
Target: 5'- gCGGCGGUGGCGGCG-GCGCgCgGGCGg -3' miRNA: 3'- aGUUGUCGCUGUCGCuCGCG-GgCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 55128 | 0.76 | 0.308244 |
Target: 5'- gCGGCGGCGGCGGCG-GCGCUggaGGCGc -3' miRNA: 3'- aGUUGUCGCUGUCGCuCGCGGg--CUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 105932 | 0.76 | 0.308244 |
Target: 5'- gCGGCGGCGGgGGCG-GCGCCCGcCu -3' miRNA: 3'- aGUUGUCGCUgUCGCuCGCGGGCuGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 110334 | 0.76 | 0.308244 |
Target: 5'- cUCGGCAGCGGCGGcCGAuGCGCgCCGGg- -3' miRNA: 3'- -AGUUGUCGCUGUC-GCU-CGCG-GGCUgc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 52218 | 0.76 | 0.315344 |
Target: 5'- cCAGCAGCGGCuGCuGGCGCaCGACGc -3' miRNA: 3'- aGUUGUCGCUGuCGcUCGCGgGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 38350 | 0.76 | 0.301267 |
Target: 5'- gUCAACgcccucgcgccgAGCGGCGGCG-GCGCgCGGCGg -3' miRNA: 3'- -AGUUG------------UCGCUGUCGCuCGCGgGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 6157 | 0.76 | 0.301267 |
Target: 5'- gCAGCGGCGACGGCGGccGCGaCCuCGGCc -3' miRNA: 3'- aGUUGUCGCUGUCGCU--CGC-GG-GCUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 30540 | 0.77 | 0.281069 |
Target: 5'- uUCGGCGGCGcccccgccGCGGCGGcaaCGCCCGGCGg -3' miRNA: 3'- -AGUUGUCGC--------UGUCGCUc--GCGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 82857 | 0.77 | 0.281069 |
Target: 5'- gCGGCAGCGGCGGCGGGCcagGCUgGGCc -3' miRNA: 3'- aGUUGUCGCUGUCGCUCG---CGGgCUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 98624 | 0.77 | 0.281069 |
Target: 5'- gCGACGGgGGCGGCGggggcgcgcGGCGCUCGGCGc -3' miRNA: 3'- aGUUGUCgCUGUCGC---------UCGCGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 110063 | 0.77 | 0.281069 |
Target: 5'- --cGCAGCGAgaCGGgGGGCGCCCGAgCGg -3' miRNA: 3'- aguUGUCGCU--GUCgCUCGCGGGCU-GC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 19813 | 0.77 | 0.286348 |
Target: 5'- gCGGCGGCGACAGCcagcgcggcugcGGCGCCCG-CGg -3' miRNA: 3'- aGUUGUCGCUGUCGc-----------UCGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 125972 | 0.77 | 0.28768 |
Target: 5'- gCGAgAGCGACAGCGAGaCGgCgGGCGa -3' miRNA: 3'- aGUUgUCGCUGUCGCUC-GCgGgCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 85534 | 0.76 | 0.294413 |
Target: 5'- uUCAuCGGcCGGCAGCGGcGCGCCCG-CGa -3' miRNA: 3'- -AGUuGUC-GCUGUCGCU-CGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 28224 | 0.76 | 0.294413 |
Target: 5'- aCGGCGGCGcCGGCGGGCGUguccaCGACGa -3' miRNA: 3'- aGUUGUCGCuGUCGCUCGCGg----GCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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