miRNA display CGI


Results 81 - 100 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 92309 0.76 0.322567
Target:  5'- gCGGCGGgGACGGCGAGgGCgaggaCGACGg -3'
miRNA:   3'- aGUUGUCgCUGUCGCUCgCGg----GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 116443 0.76 0.322567
Target:  5'- cCGGCGGCuGCGGCGGcccGCGCCgCGGCGg -3'
miRNA:   3'- aGUUGUCGcUGUCGCU---CGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 9372 0.76 0.329912
Target:  5'- gUCGGCAGCGACgaGGCGGG-GCaCCGugGc -3'
miRNA:   3'- -AGUUGUCGCUG--UCGCUCgCG-GGCugC- -5'
23582 3' -57.5 NC_005261.1 + 5857 0.75 0.33738
Target:  5'- -gAACAGCGccgcgagcGCGGCGAGCGCgCCGcgGCGg -3'
miRNA:   3'- agUUGUCGC--------UGUCGCUCGCG-GGC--UGC- -5'
23582 3' -57.5 NC_005261.1 + 91272 0.75 0.33738
Target:  5'- gCAGCGGCGACGGCGcGGacugGCCCG-CGg -3'
miRNA:   3'- aGUUGUCGCUGUCGC-UCg---CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 37982 0.75 0.33738
Target:  5'- cCGACugggGGCuGGCAGaCGuGCGCCCGGCGg -3'
miRNA:   3'- aGUUG----UCG-CUGUC-GCuCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 134324 0.75 0.344971
Target:  5'- gCGcCGGCGGC-GCGGGCGCCCG-CGc -3'
miRNA:   3'- aGUuGUCGCUGuCGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 52218 0.76 0.315344
Target:  5'- cCAGCAGCGGCuGCuGGCGCaCGACGc -3'
miRNA:   3'- aGUUGUCGCUGuCGcUCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 110334 0.76 0.308244
Target:  5'- cUCGGCAGCGGCGGcCGAuGCGCgCCGGg- -3'
miRNA:   3'- -AGUUGUCGCUGUC-GCU-CGCG-GGCUgc -5'
23582 3' -57.5 NC_005261.1 + 105932 0.76 0.308244
Target:  5'- gCGGCGGCGGgGGCG-GCGCCCGcCu -3'
miRNA:   3'- aGUUGUCGCUgUCGCuCGCGGGCuGc -5'
23582 3' -57.5 NC_005261.1 + 85534 0.76 0.294413
Target:  5'- uUCAuCGGcCGGCAGCGGcGCGCCCG-CGa -3'
miRNA:   3'- -AGUuGUC-GCUGUCGCU-CGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 28224 0.76 0.294413
Target:  5'- aCGGCGGCGcCGGCGGGCGUguccaCGACGa -3'
miRNA:   3'- aGUUGUCGCuGUCGCUCGCGg----GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 6157 0.76 0.301267
Target:  5'- gCAGCGGCGACGGCGGccGCGaCCuCGGCc -3'
miRNA:   3'- aGUUGUCGCUGUCGCU--CGC-GG-GCUGc -5'
23582 3' -57.5 NC_005261.1 + 38350 0.76 0.301267
Target:  5'- gUCAACgcccucgcgccgAGCGGCGGCG-GCGCgCGGCGg -3'
miRNA:   3'- -AGUUG------------UCGCUGUCGCuCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 70924 0.76 0.301267
Target:  5'- gCGGCGGcCGACGGCGGcgcGCGCgCGGCGg -3'
miRNA:   3'- aGUUGUC-GCUGUCGCU---CGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 109426 0.76 0.304043
Target:  5'- uUCGGCGGCGgcugccuccgccgcgGCcGCGAGCGCCCGcgccGCGg -3'
miRNA:   3'- -AGUUGUCGC---------------UGuCGCUCGCGGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 35299 0.76 0.308244
Target:  5'- gCAGCGGCGGCGGCGcuGCGCgaagCGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCu-CGCGg---GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 44420 0.76 0.308244
Target:  5'- gCGGCGGUGGCGGCG-GCGCgCgGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGCG-GgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 55128 0.76 0.308244
Target:  5'- gCGGCGGCGGCGGCG-GCGCUggaGGCGc -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGCGGg--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 108410 0.75 0.344971
Target:  5'- cUCGGCGagcGCGGC-GCGGGCGCCCG-CGc -3'
miRNA:   3'- -AGUUGU---CGCUGuCGCUCGCGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.