miRNA display CGI


Results 21 - 40 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 103609 0.66 0.84725
Target:  5'- --cGCGGCGGCAGCGcgggaGGCGgC-GGCGg -3'
miRNA:   3'- aguUGUCGCUGUCGC-----UCGCgGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 101477 0.66 0.850405
Target:  5'- gCGGCGGCGugaugcGCAGCaGGUucuugagguuggccaGCCCGGCGc -3'
miRNA:   3'- aGUUGUCGC------UGUCGcUCG---------------CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 47658 0.66 0.855078
Target:  5'- cUCGACGGCcagccGCAGCgccGAGCGCagcaCGGCc -3'
miRNA:   3'- -AGUUGUCGc----UGUCG---CUCGCGg---GCUGc -5'
23582 3' -57.5 NC_005261.1 + 134958 0.66 0.855078
Target:  5'- gCGAgGGCGcCGGCGA-CGCagaCGGCGa -3'
miRNA:   3'- aGUUgUCGCuGUCGCUcGCGg--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 43163 0.66 0.839231
Target:  5'- cCGACAucGCGGC-GCGAuacgGCGCCgcCGGCGa -3'
miRNA:   3'- aGUUGU--CGCUGuCGCU----CGCGG--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 15368 0.66 0.84725
Target:  5'- cCGGCGGCGcuCGGCGcccucGGCGCcgccgucgaugCCGACGc -3'
miRNA:   3'- aGUUGUCGCu-GUCGC-----UCGCG-----------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 56007 0.66 0.854304
Target:  5'- gCGGgGGCGGgGGCGGggaagacgcaaucGCGCCCguGACGc -3'
miRNA:   3'- aGUUgUCGCUgUCGCU-------------CGCGGG--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 39374 0.66 0.855078
Target:  5'- aUCGGCGGCcgggGAgGGCG-GC-CCUGGCGg -3'
miRNA:   3'- -AGUUGUCG----CUgUCGCuCGcGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 16431 0.66 0.84725
Target:  5'- cUCGACGGCgGGCGGCG-GCucguaGCCCuuCGa -3'
miRNA:   3'- -AGUUGUCG-CUGUCGCuCG-----CGGGcuGC- -5'
23582 3' -57.5 NC_005261.1 + 105246 0.66 0.855078
Target:  5'- aUCuGCGGCGGCAuccgcGCGAcagGCUCGGCGg -3'
miRNA:   3'- -AGuUGUCGCUGU-----CGCUcg-CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 29312 0.66 0.850405
Target:  5'- cCGGCAGCGcgccgccgccgcccgGCcGCGuGCGCUuCGGCGg -3'
miRNA:   3'- aGUUGUCGC---------------UGuCGCuCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 91144 0.66 0.84725
Target:  5'- cUCAGCcGUGccgccCGGCGAGUGgCCCGgGCGg -3'
miRNA:   3'- -AGUUGuCGCu----GUCGCUCGC-GGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 101405 0.66 0.855078
Target:  5'- gCAGCAGCG-CcGCuuGCGUCaCGACGu -3'
miRNA:   3'- aGUUGUCGCuGuCGcuCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 44182 0.66 0.855078
Target:  5'- cCGACAagcuccGCGcCAGCGAGCGCgagcugcaGGCGg -3'
miRNA:   3'- aGUUGU------CGCuGUCGCUCGCGgg------CUGC- -5'
23582 3' -57.5 NC_005261.1 + 27257 0.66 0.855078
Target:  5'- -gGGCGGgGuguGCGGGCaGCCCGGCc -3'
miRNA:   3'- agUUGUCgCuguCGCUCG-CGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 120364 0.66 0.855078
Target:  5'- -gGACGgugcGCGACGGCGccGCGCCCucGCGc -3'
miRNA:   3'- agUUGU----CGCUGUCGCu-CGCGGGc-UGC- -5'
23582 3' -57.5 NC_005261.1 + 105702 0.66 0.839231
Target:  5'- aUCAcCAGCGcCAGCGAcGUcuGCCgCGGCu -3'
miRNA:   3'- -AGUuGUCGCuGUCGCU-CG--CGG-GCUGc -5'
23582 3' -57.5 NC_005261.1 + 6007 0.66 0.839231
Target:  5'- --cGCGGCGAgggcucCGGCGAGCGUCCc--- -3'
miRNA:   3'- aguUGUCGCU------GUCGCUCGCGGGcugc -5'
23582 3' -57.5 NC_005261.1 + 14695 0.66 0.84725
Target:  5'- aUggUGGCGAgGGgGGGCGCCuuCGGCc -3'
miRNA:   3'- aGuuGUCGCUgUCgCUCGCGG--GCUGc -5'
23582 3' -57.5 NC_005261.1 + 1307 0.66 0.84725
Target:  5'- gUCGcCGGCGGCGGCacGCGCUCcggGACGc -3'
miRNA:   3'- -AGUuGUCGCUGUCGcuCGCGGG---CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.