Results 41 - 60 of 794 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 104885 | 0.66 | 0.839231 |
Target: 5'- gUCGAUcGCcGCcGCGuGCGCCCgGACGc -3' miRNA: 3'- -AGUUGuCGcUGuCGCuCGCGGG-CUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 56007 | 0.66 | 0.854304 |
Target: 5'- gCGGgGGCGGgGGCGGggaagacgcaaucGCGCCCguGACGc -3' miRNA: 3'- aGUUgUCGCUgUCGCU-------------CGCGGG--CUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 39374 | 0.66 | 0.855078 |
Target: 5'- aUCGGCGGCcgggGAgGGCG-GC-CCUGGCGg -3' miRNA: 3'- -AGUUGUCG----CUgUCGCuCGcGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 109044 | 0.66 | 0.846457 |
Target: 5'- gCAGCcgcGCGGCcgccagguagcccAGCG-GCGCCuCGGCGa -3' miRNA: 3'- aGUUGu--CGCUG-------------UCGCuCGCGG-GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 105246 | 0.66 | 0.855078 |
Target: 5'- aUCuGCGGCGGCAuccgcGCGAcagGCUCGGCGg -3' miRNA: 3'- -AGuUGUCGCUGU-----CGCUcg-CGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 50013 | 0.66 | 0.822644 |
Target: 5'- cCGcCAGCG-C-GCGGGCGCCCagccgccgcgcGACGg -3' miRNA: 3'- aGUuGUCGCuGuCGCUCGCGGG-----------CUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 120364 | 0.66 | 0.855078 |
Target: 5'- -gGACGgugcGCGACGGCGccGCGCCCucGCGc -3' miRNA: 3'- agUUGU----CGCUGUCGCu-CGCGGGc-UGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 50190 | 0.66 | 0.831027 |
Target: 5'- gCAGCAGCcgguGCAGC-AGCGCgUCGACc -3' miRNA: 3'- aGUUGUCGc---UGUCGcUCGCG-GGCUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 58959 | 0.66 | 0.831027 |
Target: 5'- cCAGCAGCG-CcuCG-GCGCCCG-CGu -3' miRNA: 3'- aGUUGUCGCuGucGCuCGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 129606 | 0.66 | 0.839231 |
Target: 5'- gCGGCAauuucGCGGCGGgguCGGGCGCCUuugcaGGCGg -3' miRNA: 3'- aGUUGU-----CGCUGUC---GCUCGCGGG-----CUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 49023 | 0.66 | 0.839231 |
Target: 5'- cUCu-CAGCGGCGGCGGGCacGCgCaGGCa -3' miRNA: 3'- -AGuuGUCGCUGUCGCUCG--CGgG-CUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 105702 | 0.66 | 0.839231 |
Target: 5'- aUCAcCAGCGcCAGCGAcGUcuGCCgCGGCu -3' miRNA: 3'- -AGUuGUCGCuGUCGCU-CG--CGG-GCUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 6007 | 0.66 | 0.839231 |
Target: 5'- --cGCGGCGAgggcucCGGCGAGCGUCCc--- -3' miRNA: 3'- aguUGUCGCU------GUCGCUCGCGGGcugc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 54781 | 0.66 | 0.84725 |
Target: 5'- gCGACAG-GACGGCGcGC-CCCGcCGc -3' miRNA: 3'- aGUUGUCgCUGUCGCuCGcGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 16431 | 0.66 | 0.84725 |
Target: 5'- cUCGACGGCgGGCGGCG-GCucguaGCCCuuCGa -3' miRNA: 3'- -AGUUGUCG-CUGUCGCuCG-----CGGGcuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 103609 | 0.66 | 0.84725 |
Target: 5'- --cGCGGCGGCAGCGcgggaGGCGgC-GGCGg -3' miRNA: 3'- aguUGUCGCUGUCGC-----UCGCgGgCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 101477 | 0.66 | 0.850405 |
Target: 5'- gCGGCGGCGugaugcGCAGCaGGUucuugagguuggccaGCCCGGCGc -3' miRNA: 3'- aGUUGUCGC------UGUCGcUCG---------------CGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 101405 | 0.66 | 0.855078 |
Target: 5'- gCAGCAGCG-CcGCuuGCGUCaCGACGu -3' miRNA: 3'- aGUUGUCGCuGuCGcuCGCGG-GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 44182 | 0.66 | 0.855078 |
Target: 5'- cCGACAagcuccGCGcCAGCGAGCGCgagcugcaGGCGg -3' miRNA: 3'- aGUUGU------CGCuGUCGCUCGCGgg------CUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 27257 | 0.66 | 0.855078 |
Target: 5'- -gGGCGGgGuguGCGGGCaGCCCGGCc -3' miRNA: 3'- agUUGUCgCuguCGCUCG-CGGGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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