miRNA display CGI


Results 61 - 80 of 794 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 6007 0.66 0.839231
Target:  5'- --cGCGGCGAgggcucCGGCGAGCGUCCc--- -3'
miRNA:   3'- aguUGUCGCU------GUCGCUCGCGGGcugc -5'
23582 3' -57.5 NC_005261.1 + 95802 0.66 0.839231
Target:  5'- cUAGcCGGCGcCGGCGGGgGCUCG-CGg -3'
miRNA:   3'- aGUU-GUCGCuGUCGCUCgCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 98266 0.66 0.855078
Target:  5'- gUCAgGCGGCG-CGcGCGuucGaCGCCCGGCGc -3'
miRNA:   3'- -AGU-UGUCGCuGU-CGCu--C-GCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 66040 0.66 0.855078
Target:  5'- gUCGGCGGCcACGGCcAGCcccggGCCCG-CGg -3'
miRNA:   3'- -AGUUGUCGcUGUCGcUCG-----CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 22584 0.66 0.855078
Target:  5'- -gAGCGGCGGaGGCG-GCGCacgcugCCGGCGc -3'
miRNA:   3'- agUUGUCGCUgUCGCuCGCG------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 53995 0.66 0.854304
Target:  5'- cCAGCGcGCGGCGcacaggcgccgccGCGAGCGCUUcGCGc -3'
miRNA:   3'- aGUUGU-CGCUGU-------------CGCUCGCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 1889 0.66 0.850405
Target:  5'- aCGGCGcGCGcCAGCGcgcgccgcucaggccAGCGCgCGGCGc -3'
miRNA:   3'- aGUUGU-CGCuGUCGC---------------UCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 91144 0.66 0.84725
Target:  5'- cUCAGCcGUGccgccCGGCGAGUGgCCCGgGCGg -3'
miRNA:   3'- -AGUUGuCGCu----GUCGCUCGC-GGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 15368 0.66 0.84725
Target:  5'- cCGGCGGCGcuCGGCGcccucGGCGCcgccgucgaugCCGACGc -3'
miRNA:   3'- aGUUGUCGCu-GUCGC-----UCGCG-----------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 35780 0.66 0.84725
Target:  5'- -aGACAGgaGGCccGCGGGCGCCaUGGCGc -3'
miRNA:   3'- agUUGUCg-CUGu-CGCUCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 97744 0.67 0.805374
Target:  5'- -uGGCAGgGGCGGgGcGgGCUCGGCGg -3'
miRNA:   3'- agUUGUCgCUGUCgCuCgCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 58027 0.67 0.805374
Target:  5'- --cGCGGCGGCAGCuccaggGAGCGCggCCG-CGu -3'
miRNA:   3'- aguUGUCGCUGUCG------CUCGCG--GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 1560 0.66 0.839231
Target:  5'- aCAcCGGCcGCAGCG-GCGCgCCGAg- -3'
miRNA:   3'- aGUuGUCGcUGUCGCuCGCG-GGCUgc -5'
23582 3' -57.5 NC_005261.1 + 4834 0.66 0.838419
Target:  5'- --cGCAgGCGGCGGCGuccGCGCCgcagccucaagggCGGCGg -3'
miRNA:   3'- aguUGU-CGCUGUCGCu--CGCGG-------------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 50190 0.66 0.831027
Target:  5'- gCAGCAGCcgguGCAGC-AGCGCgUCGACc -3'
miRNA:   3'- aGUUGUCGc---UGUCGcUCGCG-GGCUGc -5'
23582 3' -57.5 NC_005261.1 + 50013 0.66 0.822644
Target:  5'- cCGcCAGCG-C-GCGGGCGCCCagccgccgcgcGACGg -3'
miRNA:   3'- aGUuGUCGCuGuCGCUCGCGGG-----------CUGC- -5'
23582 3' -57.5 NC_005261.1 + 74449 0.66 0.822644
Target:  5'- cCGGCGGgGGguGgGGGCGCcgcccCCGGCGc -3'
miRNA:   3'- aGUUGUCgCUguCgCUCGCG-----GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 17127 0.66 0.81409
Target:  5'- -----cGCGGCGGCGGGUaCgCCGGCGg -3'
miRNA:   3'- aguuguCGCUGUCGCUCGcG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 56704 0.67 0.80888
Target:  5'- -uGGCGGCGACGcugcuaagggaccacGcCGAGCGCaUCGGCGc -3'
miRNA:   3'- agUUGUCGCUGU---------------C-GCUCGCG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 123949 0.67 0.805374
Target:  5'- --uACAGC--CAGCGcAGCGCCCGcuccGCGa -3'
miRNA:   3'- aguUGUCGcuGUCGC-UCGCGGGC----UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.