miRNA display CGI


Results 81 - 100 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 76209 0.66 0.839231
Target:  5'- gCAGCAGCcGCGccuGCGccgcGCGCuuGACGa -3'
miRNA:   3'- aGUUGUCGcUGU---CGCu---CGCGggCUGC- -5'
23582 3' -57.5 NC_005261.1 + 40244 0.66 0.831027
Target:  5'- ---cCGGgGGCcGUGAGCGCCaUGGCGg -3'
miRNA:   3'- aguuGUCgCUGuCGCUCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 135129 0.66 0.822644
Target:  5'- cUCcGCAGCG-CGGCGGGgGagaCGACGc -3'
miRNA:   3'- -AGuUGUCGCuGUCGCUCgCgg-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 82936 0.66 0.822644
Target:  5'- -uGACcGCGuaaagcCAGCGcGGCGCCgGGCGg -3'
miRNA:   3'- agUUGuCGCu-----GUCGC-UCGCGGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 108852 0.66 0.820095
Target:  5'- aCAGCAGgCGaaagcggcucugcaGCAGCGGGUGgaCGACGg -3'
miRNA:   3'- aGUUGUC-GC--------------UGUCGCUCGCggGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 56704 0.67 0.80888
Target:  5'- -uGGCGGCGACGcugcuaagggaccacGcCGAGCGCaUCGGCGc -3'
miRNA:   3'- agUUGUCGCUGU---------------C-GCUCGCG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 123949 0.67 0.805374
Target:  5'- --uACAGC--CAGCGcAGCGCCCGcuccGCGa -3'
miRNA:   3'- aguUGUCGcuGUCGC-UCGCGGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 35780 0.66 0.84725
Target:  5'- -aGACAGgaGGCccGCGGGCGCCaUGGCGc -3'
miRNA:   3'- agUUGUCg-CUGu-CGCUCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 15368 0.66 0.84725
Target:  5'- cCGGCGGCGcuCGGCGcccucGGCGCcgccgucgaugCCGACGc -3'
miRNA:   3'- aGUUGUCGCu-GUCGC-----UCGCG-----------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 91144 0.66 0.84725
Target:  5'- cUCAGCcGUGccgccCGGCGAGUGgCCCGgGCGg -3'
miRNA:   3'- -AGUUGuCGCu----GUCGCUCGC-GGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 48676 0.67 0.796503
Target:  5'- gCAACGGCGACuacgggcccGCGGGCcaucaCgCCGGCGg -3'
miRNA:   3'- aGUUGUCGCUGu--------CGCUCGc----G-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 136575 0.67 0.787487
Target:  5'- --cGCGG-GugGGCGGGCgcagagacGCCCGGCGc -3'
miRNA:   3'- aguUGUCgCugUCGCUCG--------CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 14846 0.67 0.787487
Target:  5'- aCGGCAGCaGGCGGCG-GCGCaUCG-CGc -3'
miRNA:   3'- aGUUGUCG-CUGUCGCuCGCG-GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 45616 0.67 0.78201
Target:  5'- cCGGCGGCGcggcgcggcGCGGCGGGCccgcgccggagcaguGCCCaGCGg -3'
miRNA:   3'- aGUUGUCGC---------UGUCGCUCG---------------CGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 29905 0.67 0.778332
Target:  5'- gCGGCAGCG-C-GCGAGCGgCUGcGCGa -3'
miRNA:   3'- aGUUGUCGCuGuCGCUCGCgGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 98266 0.66 0.855078
Target:  5'- gUCAgGCGGCG-CGcGCGuucGaCGCCCGGCGc -3'
miRNA:   3'- -AGU-UGUCGCuGU-CGCu--C-GCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 66040 0.66 0.855078
Target:  5'- gUCGGCGGCcACGGCcAGCcccggGCCCG-CGg -3'
miRNA:   3'- -AGUUGUCGcUGUCGcUCG-----CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 22584 0.66 0.855078
Target:  5'- -gAGCGGCGGaGGCG-GCGCacgcugCCGGCGc -3'
miRNA:   3'- agUUGUCGCUgUCGCuCGCG------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 53995 0.66 0.854304
Target:  5'- cCAGCGcGCGGCGcacaggcgccgccGCGAGCGCUUcGCGc -3'
miRNA:   3'- aGUUGU-CGCUGU-------------CGCUCGCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 1889 0.66 0.850405
Target:  5'- aCGGCGcGCGcCAGCGcgcgccgcucaggccAGCGCgCGGCGc -3'
miRNA:   3'- aGUUGU-CGCuGUCGC---------------UCGCGgGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.