miRNA display CGI


Results 21 - 40 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 89148 0.66 0.855078
Target:  5'- cUCAGCGGgcccGCGGCGcGUGCCCGcuucGCGa -3'
miRNA:   3'- -AGUUGUCgc--UGUCGCuCGCGGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 22072 0.66 0.855078
Target:  5'- cCGGCGG-GGCucgAGgGGGCGCCgCGugGg -3'
miRNA:   3'- aGUUGUCgCUG---UCgCUCGCGG-GCugC- -5'
23582 3' -57.5 NC_005261.1 + 134516 0.66 0.855078
Target:  5'- cCGGCAGCGGCGcGUcuGAGCuCCCGGu- -3'
miRNA:   3'- aGUUGUCGCUGU-CG--CUCGcGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 33103 0.66 0.855078
Target:  5'- --uGCGcGCGcCGGCGGcccGCGCCCGcGCGg -3'
miRNA:   3'- aguUGU-CGCuGUCGCU---CGCGGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 131774 0.66 0.855078
Target:  5'- -gGGCGGgGuguGCGGGCaGCCCGGCc -3'
miRNA:   3'- agUUGUCgCuguCGCUCG-CGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 29998 0.66 0.855078
Target:  5'- cCGGCAGCGGCGcGUcuGAGCuCCCGGu- -3'
miRNA:   3'- aGUUGUCGCUGU-CG--CUCGcGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 98266 0.66 0.855078
Target:  5'- gUCAgGCGGCG-CGcGCGuucGaCGCCCGGCGc -3'
miRNA:   3'- -AGU-UGUCGCuGU-CGCu--C-GCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 47709 0.66 0.855078
Target:  5'- gUCGGCGGCGuCGG-GGGCcucCUCGGCGg -3'
miRNA:   3'- -AGUUGUCGCuGUCgCUCGc--GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 53995 0.66 0.854304
Target:  5'- cCAGCGcGCGGCGcacaggcgccgccGCGAGCGCUUcGCGc -3'
miRNA:   3'- aGUUGU-CGCUGU-------------CGCUCGCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 113285 0.66 0.854304
Target:  5'- aCGAgGGCGugGuccucucgcugccGCGGGCcuggGCCCGGCu -3'
miRNA:   3'- aGUUgUCGCugU-------------CGCUCG----CGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 56007 0.66 0.854304
Target:  5'- gCGGgGGCGGgGGCGGggaagacgcaaucGCGCCCguGACGc -3'
miRNA:   3'- aGUUgUCGCUgUCGCU-------------CGCGGG--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 4822 0.66 0.85275
Target:  5'- aCAcCAGCGAgCGGgccuuguuuugggcCGcGCGCCCGugGg -3'
miRNA:   3'- aGUuGUCGCU-GUC--------------GCuCGCGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 101477 0.66 0.850405
Target:  5'- gCGGCGGCGugaugcGCAGCaGGUucuugagguuggccaGCCCGGCGc -3'
miRNA:   3'- aGUUGUCGC------UGUCGcUCG---------------CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 106406 0.66 0.850405
Target:  5'- aCGGCGcGCGcCAGCGcgcgccgcucaggccAGCGCgCGGCGc -3'
miRNA:   3'- aGUUGU-CGCuGUCGC---------------UCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 29312 0.66 0.850405
Target:  5'- cCGGCAGCGcgccgccgccgcccgGCcGCGuGCGCUuCGGCGg -3'
miRNA:   3'- aGUUGUCGC---------------UGuCGCuCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 133829 0.66 0.850405
Target:  5'- cCGGCAGCGcgccgccgccgcccgGCcGCGuGCGCUuCGGCGg -3'
miRNA:   3'- aGUUGUCGC---------------UGuCGCuCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 1889 0.66 0.850405
Target:  5'- aCGGCGcGCGcCAGCGcgcgccgcucaggccAGCGCgCGGCGc -3'
miRNA:   3'- aGUUGU-CGCuGUCGC---------------UCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 5332 0.66 0.84725
Target:  5'- cUCGGCGcCGcCcGCG-GCGCCCGGCu -3'
miRNA:   3'- -AGUUGUcGCuGuCGCuCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 105824 0.66 0.84725
Target:  5'- gUCGcCGGCGGCGGCacGCGCUCcggGACGc -3'
miRNA:   3'- -AGUuGUCGCUGUCGcuCGCGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 104192 0.66 0.84725
Target:  5'- -aGGCAG-GGCAGCGcGCGCgCCG-CGc -3'
miRNA:   3'- agUUGUCgCUGUCGCuCGCG-GGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.