Results 61 - 80 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 60710 | 0.67 | 0.750852 |
Target: 5'- gGCAUCGGGggCgggGGCGCgGCGGCGa -3' miRNA: 3'- aUGUAGCUCggGa--CCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 42423 | 0.67 | 0.731234 |
Target: 5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3' miRNA: 3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 10785 | 0.67 | 0.728259 |
Target: 5'- gUGCAaCGAGCgCCUGGaccgaaugcugaaguCUGCGGCGa -3' miRNA: 3'- -AUGUaGCUCG-GGACCgu-------------GACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 33801 | 0.67 | 0.72129 |
Target: 5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3' miRNA: 3'- aUGUaGCUCGGGac----CGugACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 28049 | 0.67 | 0.72129 |
Target: 5'- aACGUCGcggaacugccGCCCggggGGCGCggugGCGGCGg -3' miRNA: 3'- aUGUAGCu---------CGGGa---CCGUGa---CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 73232 | 0.67 | 0.72129 |
Target: 5'- cUACAaggaccuccUgGAGCaCCUGcacGCGCUGCGGCGg -3' miRNA: 3'- -AUGU---------AgCUCG-GGAC---CGUGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 17178 | 0.66 | 0.80686 |
Target: 5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3' miRNA: 3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 7989 | 0.66 | 0.815684 |
Target: 5'- ----aCGAGCCgCUGGCGCgGCGccugaGCGg -3' miRNA: 3'- auguaGCUCGG-GACCGUGaCGC-----UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 90416 | 0.66 | 0.815684 |
Target: 5'- gUACGU-GAGCgCCcuggUGGCGCUGCGcGCGc -3' miRNA: 3'- -AUGUAgCUCG-GG----ACCGUGACGC-UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 127794 | 0.66 | 0.797876 |
Target: 5'- aGCggCGGGCC--GGCGCcGCGGCGg -3' miRNA: 3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 70571 | 0.66 | 0.797876 |
Target: 5'- cGCGaaGAGCUCgGGCGCgagcgcaGCGGCGUg -3' miRNA: 3'- aUGUagCUCGGGaCCGUGa------CGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 99569 | 0.66 | 0.788739 |
Target: 5'- gGCGUCGuAGCUCUGGgC-CUGCG-CGc -3' miRNA: 3'- aUGUAGC-UCGGGACC-GuGACGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 57479 | 0.66 | 0.788739 |
Target: 5'- aACAggcUCGAGUCCcccgcgacgGGCACgucccgGCGGCGg -3' miRNA: 3'- aUGU---AGCUCGGGa--------CCGUGa-----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 113305 | 0.66 | 0.788739 |
Target: 5'- cUGCcgCGGGCCUgGGCccgGCUGCG-CGa -3' miRNA: 3'- -AUGuaGCUCGGGaCCG---UGACGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 135012 | 0.66 | 0.80686 |
Target: 5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3' miRNA: 3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 56806 | 0.66 | 0.788739 |
Target: 5'- gGCAgCGGGCcacgguguuCCUGGUGCcGCGGCGg -3' miRNA: 3'- aUGUaGCUCG---------GGACCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 51783 | 0.66 | 0.787817 |
Target: 5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3' miRNA: 3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 46595 | 0.66 | 0.815684 |
Target: 5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3' miRNA: 3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 48915 | 0.66 | 0.815684 |
Target: 5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3' miRNA: 3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 130228 | 0.66 | 0.815684 |
Target: 5'- aGCGUCG-GCCCgcucaGGCGCcGCGccaGCGg -3' miRNA: 3'- aUGUAGCuCGGGa----CCGUGaCGC---UGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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