miRNA display CGI


Results 61 - 80 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 89248 0.67 0.750852
Target:  5'- gACAUCGAGUgCCUGucguGUGCggGCGACGg -3'
miRNA:   3'- aUGUAGCUCG-GGAC----CGUGa-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 89981 0.66 0.779459
Target:  5'- uUGCAUUG-GCCCc-GCGCUGCGGgGg -3'
miRNA:   3'- -AUGUAGCuCGGGacCGUGACGCUgCa -5'
23582 5' -57.6 NC_005261.1 + 90416 0.66 0.815684
Target:  5'- gUACGU-GAGCgCCcuggUGGCGCUGCGcGCGc -3'
miRNA:   3'- -AUGUAgCUCG-GG----ACCGUGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 92574 0.69 0.629398
Target:  5'- cGCGUUGAucacGCCCgcugGGCACUGCuccGGCGc -3'
miRNA:   3'- aUGUAGCU----CGGGa---CCGUGACG---CUGCa -5'
23582 5' -57.6 NC_005261.1 + 93936 0.69 0.598497
Target:  5'- gGCAgCG-GCCCUGGCccgccGCUgGCGGCGg -3'
miRNA:   3'- aUGUaGCuCGGGACCG-----UGA-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 95720 0.68 0.670589
Target:  5'- cGCGcUCGGGCCCgccGCGCUcaGCGGCGc -3'
miRNA:   3'- aUGU-AGCUCGGGac-CGUGA--CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 96117 0.66 0.779459
Target:  5'- gACGUCGcuGGCCaUGGUcgacCUGCGGCGg -3'
miRNA:   3'- aUGUAGC--UCGGgACCGu---GACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 98236 0.69 0.639713
Target:  5'- gGCAUCGAuuuccgcgGCCCggugcGGCGCgucagGCGGCGc -3'
miRNA:   3'- aUGUAGCU--------CGGGa----CCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 98760 0.66 0.779459
Target:  5'- cGCggCGGGCCCguuggGGCGCcGCGcCGc -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 99497 0.68 0.670589
Target:  5'- gGCG-CGGGCCCgGGCuCUGCGgGCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGuGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 99569 0.66 0.788739
Target:  5'- gGCGUCGuAGCUCUGGgC-CUGCG-CGc -3'
miRNA:   3'- aUGUAGC-UCGGGACC-GuGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 101265 0.66 0.80686
Target:  5'- cGCAcCGAGCUCUGcGcCGC-GCGGCGg -3'
miRNA:   3'- aUGUaGCUCGGGAC-C-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 102291 0.68 0.660317
Target:  5'- gGC-UCGGGCCUgGGCgcccgcuggGCUGCGGCGc -3'
miRNA:   3'- aUGuAGCUCGGGaCCG---------UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 104744 0.69 0.608782
Target:  5'- gUGCucgCGGGCCCcgcgagcgGGCccgGCUGCGGCGg -3'
miRNA:   3'- -AUGua-GCUCGGGa-------CCG---UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 105282 0.68 0.711268
Target:  5'- gGCAgcgccggCGAGCCCgGGCGC-GCGAgCGc -3'
miRNA:   3'- aUGUa------GCUCGGGaCCGUGaCGCU-GCa -5'
23582 5' -57.6 NC_005261.1 + 105578 0.66 0.788739
Target:  5'- cGCGUagaGGGCCUcggGGCGCgugcgcGCGACGa -3'
miRNA:   3'- aUGUAg--CUCGGGa--CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 107184 0.68 0.691028
Target:  5'- gGCggCGuAGCCCUGcagccGCGCgaagGCGGCGUg -3'
miRNA:   3'- aUGuaGC-UCGGGAC-----CGUGa---CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 108343 0.76 0.276274
Target:  5'- cUGCcgCGGGCCCgGGCGCUgGCGGCa- -3'
miRNA:   3'- -AUGuaGCUCGGGaCCGUGA-CGCUGca -5'
23582 5' -57.6 NC_005261.1 + 108731 0.67 0.760506
Target:  5'- cGCG-CGGGCCagcggcGGCGCcGCGGCGUc -3'
miRNA:   3'- aUGUaGCUCGGga----CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 108983 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.