miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 17178 0.66 0.80686
Target:  5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3'
miRNA:   3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 135012 0.66 0.80686
Target:  5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3'
miRNA:   3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 46595 0.66 0.815684
Target:  5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3'
miRNA:   3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5'
23582 5' -57.6 NC_005261.1 + 48915 0.66 0.815684
Target:  5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 105578 0.66 0.788739
Target:  5'- cGCGUagaGGGCCUcggGGCGCgugcgcGCGACGa -3'
miRNA:   3'- aUGUAg--CUCGGGa--CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 56806 0.66 0.788739
Target:  5'- gGCAgCGGGCcacgguguuCCUGGUGCcGCGGCGg -3'
miRNA:   3'- aUGUaGCUCG---------GGACCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 51783 0.66 0.787817
Target:  5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3'
miRNA:   3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 89248 0.67 0.750852
Target:  5'- gACAUCGAGUgCCUGucguGUGCggGCGACGg -3'
miRNA:   3'- aUGUAGCUCG-GGAC----CGUGa-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 30408 0.67 0.760506
Target:  5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3'
miRNA:   3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5'
23582 5' -57.6 NC_005261.1 + 108731 0.67 0.760506
Target:  5'- cGCG-CGGGCCagcggcGGCGCcGCGGCGUc -3'
miRNA:   3'- aUGUaGCUCGGga----CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 49581 0.67 0.770045
Target:  5'- aACA-CGGGCUCggGGCGC-GCGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGa-CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 51142 0.67 0.770045
Target:  5'- gGCG-CGAaaGCCCccggGGCcCUGCGGCGg -3'
miRNA:   3'- aUGUaGCU--CGGGa---CCGuGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 76160 0.66 0.779459
Target:  5'- cGCA-CGAcGCCgUGGCGCUGCaGuACGa -3'
miRNA:   3'- aUGUaGCU-CGGgACCGUGACG-C-UGCa -5'
23582 5' -57.6 NC_005261.1 + 60139 0.66 0.779459
Target:  5'- aACA-CGGGCUCccaGGCGCUGCaGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGa--CCGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 96117 0.66 0.779459
Target:  5'- gACGUCGcuGGCCaUGGUcgacCUGCGGCGg -3'
miRNA:   3'- aUGUAGC--UCGGgACCGu---GACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 4466 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 130228 0.66 0.815684
Target:  5'- aGCGUCG-GCCCgcucaGGCGCcGCGccaGCGg -3'
miRNA:   3'- aUGUAGCuCGGGa----CCGUGaCGC---UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.