Results 61 - 80 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 30064 | 0.7 | 0.578009 |
Target: 5'- gGCcgCGcGCCCUGGCggacgcGCUGCaGGCGg -3' miRNA: 3'- aUGuaGCuCGGGACCG------UGACG-CUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 80153 | 0.7 | 0.56782 |
Target: 5'- gACG-CGGGCCCUGGCGCcGCcguccGCGUc -3' miRNA: 3'- aUGUaGCUCGGGACCGUGaCGc----UGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 70831 | 0.71 | 0.537555 |
Target: 5'- gGCggCGcuGGUCCUGGCGCgcGCGGCGUc -3' miRNA: 3'- aUGuaGC--UCGGGACCGUGa-CGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 3557 | 0.71 | 0.517689 |
Target: 5'- -uCGUCGGGUCCUGGCGgCUG-GugGUu -3' miRNA: 3'- auGUAGCUCGGGACCGU-GACgCugCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 73232 | 0.67 | 0.72129 |
Target: 5'- cUACAaggaccuccUgGAGCaCCUGcacGCGCUGCGGCGg -3' miRNA: 3'- -AUGU---------AgCUCG-GGAC---CGUGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 28049 | 0.67 | 0.72129 |
Target: 5'- aACGUCGcggaacugccGCCCggggGGCGCggugGCGGCGg -3' miRNA: 3'- aUGUAGCu---------CGGGa---CCGUGa---CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 33801 | 0.67 | 0.72129 |
Target: 5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3' miRNA: 3'- aUGUaGCUCGGGac----CGugACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 101265 | 0.66 | 0.80686 |
Target: 5'- cGCAcCGAGCUCUGcGcCGC-GCGGCGg -3' miRNA: 3'- aUGUaGCUCGGGAC-C-GUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 21306 | 0.66 | 0.80686 |
Target: 5'- gGCGUCcagcAGCCCgcGGCGgCUGuCGACGUu -3' miRNA: 3'- aUGUAGc---UCGGGa-CCGU-GAC-GCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 27546 | 0.66 | 0.80686 |
Target: 5'- gGCG-CGgaAGCCCUcgugcuccaGGCGCUGCG-CGUa -3' miRNA: 3'- aUGUaGC--UCGGGA---------CCGUGACGCuGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 3974 | 0.66 | 0.805969 |
Target: 5'- gUACAUCGgguacgcGGCCCgcagGGCGCgUGCGccACGc -3' miRNA: 3'- -AUGUAGC-------UCGGGa---CCGUG-ACGC--UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 7907 | 0.66 | 0.797876 |
Target: 5'- cGCGgcCGGGCCguccaUGGCGCUGCaGCGg -3' miRNA: 3'- aUGUa-GCUCGGg----ACCGUGACGcUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 6135 | 0.66 | 0.797876 |
Target: 5'- cGCGUCGcggccGCCCUccgcGGCAgCgGCGACGg -3' miRNA: 3'- aUGUAGCu----CGGGA----CCGU-GaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 88908 | 0.66 | 0.788739 |
Target: 5'- cGCGUCGAGUUCcGGCucgaggGCUGCG-CGg -3' miRNA: 3'- aUGUAGCUCGGGaCCG------UGACGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 56704 | 0.66 | 0.788739 |
Target: 5'- cGCGguccUGcAGCgCCUGGCGCcgGCGGCGg -3' miRNA: 3'- aUGUa---GC-UCG-GGACCGUGa-CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 4961 | 0.66 | 0.788739 |
Target: 5'- gGCGcCGGcGCCCUGGUACUcGCG-CGc -3' miRNA: 3'- aUGUaGCU-CGGGACCGUGA-CGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 108983 | 0.66 | 0.779459 |
Target: 5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3' miRNA: 3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 60710 | 0.67 | 0.750852 |
Target: 5'- gGCAUCGGGggCgggGGCGCgGCGGCGa -3' miRNA: 3'- aUGUAGCUCggGa--CCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 42423 | 0.67 | 0.731234 |
Target: 5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3' miRNA: 3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 10785 | 0.67 | 0.728259 |
Target: 5'- gUGCAaCGAGCgCCUGGaccgaaugcugaaguCUGCGGCGa -3' miRNA: 3'- -AUGUaGCUCG-GGACCgu-------------GACGCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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