Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 3974 | 0.66 | 0.805969 |
Target: 5'- gUACAUCGgguacgcGGCCCgcagGGCGCgUGCGccACGc -3' miRNA: 3'- -AUGUAGC-------UCGGGa---CCGUG-ACGC--UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 27546 | 0.66 | 0.80686 |
Target: 5'- gGCG-CGgaAGCCCUcgugcuccaGGCGCUGCG-CGUa -3' miRNA: 3'- aUGUaGC--UCGGGA---------CCGUGACGCuGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 21306 | 0.66 | 0.80686 |
Target: 5'- gGCGUCcagcAGCCCgcGGCGgCUGuCGACGUu -3' miRNA: 3'- aUGUAGc---UCGGGa-CCGU-GAC-GCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 101265 | 0.66 | 0.80686 |
Target: 5'- cGCAcCGAGCUCUGcGcCGC-GCGGCGg -3' miRNA: 3'- aUGUaGCUCGGGAC-C-GUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 108983 | 0.66 | 0.779459 |
Target: 5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3' miRNA: 3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 98760 | 0.66 | 0.779459 |
Target: 5'- cGCggCGGGCCCguuggGGCGCcGCGcCGc -3' miRNA: 3'- aUGuaGCUCGGGa----CCGUGaCGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 60178 | 0.67 | 0.770992 |
Target: 5'- cGCGggggcCGGGCCCgcgaccaccggcuggGGCGgaGCGGCGUa -3' miRNA: 3'- aUGUa----GCUCGGGa--------------CCGUgaCGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 33801 | 0.67 | 0.72129 |
Target: 5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3' miRNA: 3'- aUGUaGCUCGGGac----CGugACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 10785 | 0.67 | 0.728259 |
Target: 5'- gUGCAaCGAGCgCCUGGaccgaaugcugaaguCUGCGGCGa -3' miRNA: 3'- -AUGUaGCUCG-GGACCgu-------------GACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 42423 | 0.67 | 0.731234 |
Target: 5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3' miRNA: 3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 60710 | 0.67 | 0.750852 |
Target: 5'- gGCAUCGGGggCgggGGCGCgGCGGCGa -3' miRNA: 3'- aUGUAGCUCggGa--CCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 12892 | 0.67 | 0.760506 |
Target: 5'- cUGC-UgGAcGCCCUGcGCGCUGCgGACGc -3' miRNA: 3'- -AUGuAgCU-CGGGAC-CGUGACG-CUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 134925 | 0.67 | 0.760506 |
Target: 5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3' miRNA: 3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 117615 | 0.67 | 0.760506 |
Target: 5'- gGCAgucccggaugCGGGCCaggGGCGCUGUgucGACGUa -3' miRNA: 3'- aUGUa---------GCUCGGga-CCGUGACG---CUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 67665 | 0.67 | 0.760506 |
Target: 5'- cGCGccCGAGCUCUucgcGGCGCccUGCGGCGg -3' miRNA: 3'- aUGUa-GCUCGGGA----CCGUG--ACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 54737 | 0.67 | 0.770045 |
Target: 5'- gGCG-CGcGCgCCUGGCGCUcuacgGCGGCGa -3' miRNA: 3'- aUGUaGCuCG-GGACCGUGA-----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 7989 | 0.66 | 0.815684 |
Target: 5'- ----aCGAGCCgCUGGCGCgGCGccugaGCGg -3' miRNA: 3'- auguaGCUCGG-GACCGUGaCGC-----UGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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