miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 133641 0.68 0.711268
Target:  5'- -----gGAGCCCUGGCGCcggGgGGCGc -3'
miRNA:   3'- auguagCUCGGGACCGUGa--CgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 36995 0.68 0.710262
Target:  5'- cUGCG-CGAGCUgaGGCgccaccucgacgcGCUGCGGCGg -3'
miRNA:   3'- -AUGUaGCUCGGgaCCG-------------UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 124907 0.68 0.701177
Target:  5'- cGCG-CGAGUgCgagGGCGCUGCGuACGa -3'
miRNA:   3'- aUGUaGCUCGgGa--CCGUGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 115403 0.68 0.691028
Target:  5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3'
miRNA:   3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 80671 0.68 0.670589
Target:  5'- gGCGcCgGAGCCg-GGCGCgUGCGACGUg -3'
miRNA:   3'- aUGUaG-CUCGGgaCCGUG-ACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 51160 0.68 0.670589
Target:  5'- cUACGUgcUGGGCCCggccgcggUGGCGCUGCG-UGUg -3'
miRNA:   3'- -AUGUA--GCUCGGG--------ACCGUGACGCuGCA- -5'
23582 5' -57.6 NC_005261.1 + 102291 0.68 0.660317
Target:  5'- gGC-UCGGGCCUgGGCgcccgcuggGCUGCGGCGc -3'
miRNA:   3'- aUGuAGCUCGGGaCCG---------UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 20556 0.69 0.639713
Target:  5'- cGCcgCGGGCCCggccgGGCGCgGCGGgGc -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCUgCa -5'
23582 5' -57.6 NC_005261.1 + 92574 0.69 0.629398
Target:  5'- cGCGUUGAucacGCCCgcugGGCACUGCuccGGCGc -3'
miRNA:   3'- aUGUAGCU----CGGGa---CCGUGACG---CUGCa -5'
23582 5' -57.6 NC_005261.1 + 99497 0.68 0.670589
Target:  5'- gGCG-CGGGCCCgGGCuCUGCGgGCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGuGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 112435 1.06 0.002525
Target:  5'- gUACAUCGAGCCCUGGCACUGCGACGUg -3'
miRNA:   3'- -AUGUAGCUCGGGACCGUGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 113305 0.66 0.788739
Target:  5'- cUGCcgCGGGCCUgGGCccgGCUGCG-CGa -3'
miRNA:   3'- -AUGuaGCUCGGGaCCG---UGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 57479 0.66 0.788739
Target:  5'- aACAggcUCGAGUCCcccgcgacgGGCACgucccgGCGGCGg -3'
miRNA:   3'- aUGU---AGCUCGGGa--------CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 99569 0.66 0.788739
Target:  5'- gGCGUCGuAGCUCUGGgC-CUGCG-CGc -3'
miRNA:   3'- aUGUAGC-UCGGGACC-GuGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 70571 0.66 0.797876
Target:  5'- cGCGaaGAGCUCgGGCGCgagcgcaGCGGCGUg -3'
miRNA:   3'- aUGUagCUCGGGaCCGUGa------CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 127794 0.66 0.797876
Target:  5'- aGCggCGGGCC--GGCGCcGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 17178 0.66 0.80686
Target:  5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3'
miRNA:   3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 135012 0.66 0.80686
Target:  5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3'
miRNA:   3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 46595 0.66 0.815684
Target:  5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3'
miRNA:   3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5'
23582 5' -57.6 NC_005261.1 + 48915 0.66 0.815684
Target:  5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.