Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 133641 | 0.68 | 0.711268 |
Target: 5'- -----gGAGCCCUGGCGCcggGgGGCGc -3' miRNA: 3'- auguagCUCGGGACCGUGa--CgCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 36995 | 0.68 | 0.710262 |
Target: 5'- cUGCG-CGAGCUgaGGCgccaccucgacgcGCUGCGGCGg -3' miRNA: 3'- -AUGUaGCUCGGgaCCG-------------UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 124907 | 0.68 | 0.701177 |
Target: 5'- cGCG-CGAGUgCgagGGCGCUGCGuACGa -3' miRNA: 3'- aUGUaGCUCGgGa--CCGUGACGC-UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 115403 | 0.68 | 0.691028 |
Target: 5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3' miRNA: 3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 80671 | 0.68 | 0.670589 |
Target: 5'- gGCGcCgGAGCCg-GGCGCgUGCGACGUg -3' miRNA: 3'- aUGUaG-CUCGGgaCCGUG-ACGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 51160 | 0.68 | 0.670589 |
Target: 5'- cUACGUgcUGGGCCCggccgcggUGGCGCUGCG-UGUg -3' miRNA: 3'- -AUGUA--GCUCGGG--------ACCGUGACGCuGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 102291 | 0.68 | 0.660317 |
Target: 5'- gGC-UCGGGCCUgGGCgcccgcuggGCUGCGGCGc -3' miRNA: 3'- aUGuAGCUCGGGaCCG---------UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 20556 | 0.69 | 0.639713 |
Target: 5'- cGCcgCGGGCCCggccgGGCGCgGCGGgGc -3' miRNA: 3'- aUGuaGCUCGGGa----CCGUGaCGCUgCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 92574 | 0.69 | 0.629398 |
Target: 5'- cGCGUUGAucacGCCCgcugGGCACUGCuccGGCGc -3' miRNA: 3'- aUGUAGCU----CGGGa---CCGUGACG---CUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 99497 | 0.68 | 0.670589 |
Target: 5'- gGCG-CGGGCCCgGGCuCUGCGgGCGc -3' miRNA: 3'- aUGUaGCUCGGGaCCGuGACGC-UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 112435 | 1.06 | 0.002525 |
Target: 5'- gUACAUCGAGCCCUGGCACUGCGACGUg -3' miRNA: 3'- -AUGUAGCUCGGGACCGUGACGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 113305 | 0.66 | 0.788739 |
Target: 5'- cUGCcgCGGGCCUgGGCccgGCUGCG-CGa -3' miRNA: 3'- -AUGuaGCUCGGGaCCG---UGACGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 57479 | 0.66 | 0.788739 |
Target: 5'- aACAggcUCGAGUCCcccgcgacgGGCACgucccgGCGGCGg -3' miRNA: 3'- aUGU---AGCUCGGGa--------CCGUGa-----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 99569 | 0.66 | 0.788739 |
Target: 5'- gGCGUCGuAGCUCUGGgC-CUGCG-CGc -3' miRNA: 3'- aUGUAGC-UCGGGACC-GuGACGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 70571 | 0.66 | 0.797876 |
Target: 5'- cGCGaaGAGCUCgGGCGCgagcgcaGCGGCGUg -3' miRNA: 3'- aUGUagCUCGGGaCCGUGa------CGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 127794 | 0.66 | 0.797876 |
Target: 5'- aGCggCGGGCC--GGCGCcGCGGCGg -3' miRNA: 3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 17178 | 0.66 | 0.80686 |
Target: 5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3' miRNA: 3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 135012 | 0.66 | 0.80686 |
Target: 5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3' miRNA: 3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 46595 | 0.66 | 0.815684 |
Target: 5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3' miRNA: 3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 48915 | 0.66 | 0.815684 |
Target: 5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3' miRNA: 3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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