miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 5' -50.8 NC_005261.1 + 111943 1.11 0.006271
Target:  5'- gGCGCUGAAGUACGAGGAGAUGUACCUg -3'
miRNA:   3'- -CGCGACUUCAUGCUCCUCUACAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 51909 0.77 0.618759
Target:  5'- cGCGCUGAAGUACGuggccagcacgcuGGAGGgcgacGUGCCc -3'
miRNA:   3'- -CGCGACUUCAUGCu------------CCUCUa----CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 55297 0.76 0.665631
Target:  5'- gGCGCUGAagagccGGUGCGGGGGGucaggggGUGCUg -3'
miRNA:   3'- -CGCGACU------UCAUGCUCCUCua-----CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 79088 0.74 0.748783
Target:  5'- aGCGCcuucaUGggGUugcugcggagGCG-GGAGAUGUACCg -3'
miRNA:   3'- -CGCG-----ACuuCA----------UGCuCCUCUACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 11474 0.74 0.778416
Target:  5'- gGCGCgGAGGgGCGGGGcGGggGUGCCg -3'
miRNA:   3'- -CGCGaCUUCaUGCUCC-UCuaCAUGGa -5'
23583 5' -50.8 NC_005261.1 + 115991 0.74 0.778416
Target:  5'- gGCGCgGAGGgGCGGGGcGGggGUGCCg -3'
miRNA:   3'- -CGCGaCUUCaUGCUCC-UCuaCAUGGa -5'
23583 5' -50.8 NC_005261.1 + 13832 0.72 0.842128
Target:  5'- gGCGCUGcAGUACcggcuGGGGGUGggggGCCUg -3'
miRNA:   3'- -CGCGACuUCAUGcu---CCUCUACa---UGGA- -5'
23583 5' -50.8 NC_005261.1 + 14689 0.71 0.895782
Target:  5'- uCGCUGAuGGUgGCGAGGGGggGcGCCUu -3'
miRNA:   3'- cGCGACU-UCA-UGCUCCUCuaCaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 58295 0.7 0.915137
Target:  5'- cGCGCcGggGggcGCGGGGAGggGgcgGCCc -3'
miRNA:   3'- -CGCGaCuuCa--UGCUCCUCuaCa--UGGa -5'
23583 5' -50.8 NC_005261.1 + 76173 0.7 0.937337
Target:  5'- gGCGCUGcAGUACGAGcGGGGccugggcGUGCUg -3'
miRNA:   3'- -CGCGACuUCAUGCUC-CUCUa------CAUGGa -5'
23583 5' -50.8 NC_005261.1 + 14948 0.7 0.937337
Target:  5'- gGCGCUGGAa-GCGAGcGGgcGUGCCUg -3'
miRNA:   3'- -CGCGACUUcaUGCUCcUCuaCAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 57955 0.69 0.94224
Target:  5'- cGUGCUGucGgGCGGccuGGAGAcGUACCUg -3'
miRNA:   3'- -CGCGACuuCaUGCU---CCUCUaCAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 102646 0.69 0.946433
Target:  5'- gGCGCUGggGUccggGCGAuGGAGGauagcgcggcggcUGcUGCCg -3'
miRNA:   3'- -CGCGACuuCA----UGCU-CCUCU-------------AC-AUGGa -5'
23583 5' -50.8 NC_005261.1 + 32793 0.69 0.95128
Target:  5'- cGCGCUGuacGGcGCGAGcGAGAccUACCUg -3'
miRNA:   3'- -CGCGACu--UCaUGCUC-CUCUacAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 112671 0.69 0.955423
Target:  5'- aGCgGCUGGAGcGCGAGGGGcUGggcgucgagGCCg -3'
miRNA:   3'- -CG-CGACUUCaUGCUCCUCuACa--------UGGa -5'
23583 5' -50.8 NC_005261.1 + 126066 0.68 0.962977
Target:  5'- gGCGCUGGccuGUGCGGGGcu-UGggGCCUg -3'
miRNA:   3'- -CGCGACUu--CAUGCUCCucuACa-UGGA- -5'
23583 5' -50.8 NC_005261.1 + 71566 0.68 0.966397
Target:  5'- gGCGCUGggGcUGCucgcgGAGGAGGcg-GCCg -3'
miRNA:   3'- -CGCGACuuC-AUG-----CUCCUCUacaUGGa -5'
23583 5' -50.8 NC_005261.1 + 78523 0.68 0.966397
Target:  5'- gGCGCgagcgGAGGcgGCGAGGGGAagggGaGCCg -3'
miRNA:   3'- -CGCGa----CUUCa-UGCUCCUCUa---CaUGGa -5'
23583 5' -50.8 NC_005261.1 + 115322 0.68 0.966397
Target:  5'- uGCGCgaucggGggGUACcGGGAcGUGUACUUc -3'
miRNA:   3'- -CGCGa-----CuuCAUGcUCCUcUACAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 85570 0.68 0.969896
Target:  5'- cCGCUcGAAGUGCGcgcggggccgggggcGGAGAcgUGUACCg -3'
miRNA:   3'- cGCGA-CUUCAUGCu--------------CCUCU--ACAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.