Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23583 | 5' | -50.8 | NC_005261.1 | + | 11474 | 0.74 | 0.778416 |
Target: 5'- gGCGCgGAGGgGCGGGGcGGggGUGCCg -3' miRNA: 3'- -CGCGaCUUCaUGCUCC-UCuaCAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 13280 | 0.66 | 0.989264 |
Target: 5'- aCGCUGuuGUugGCGGGGcgcAGGUGUGCg- -3' miRNA: 3'- cGCGACuuCA--UGCUCC---UCUACAUGga -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 13660 | 0.67 | 0.983764 |
Target: 5'- aGCGCgu-GGUGCGcgagcggcgcgccuGGGAGAUG-GCCg -3' miRNA: 3'- -CGCGacuUCAUGC--------------UCCUCUACaUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 13832 | 0.72 | 0.842128 |
Target: 5'- gGCGCUGcAGUACcggcuGGGGGUGggggGCCUg -3' miRNA: 3'- -CGCGACuUCAUGcu---CCUCUACa---UGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 14689 | 0.71 | 0.895782 |
Target: 5'- uCGCUGAuGGUgGCGAGGGGggGcGCCUu -3' miRNA: 3'- cGCGACU-UCA-UGCUCCUCuaCaUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 14948 | 0.7 | 0.937337 |
Target: 5'- gGCGCUGGAa-GCGAGcGGgcGUGCCUg -3' miRNA: 3'- -CGCGACUUcaUGCUCcUCuaCAUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 22331 | 0.67 | 0.977116 |
Target: 5'- gGCGCUGAcgacggcggggaggAGgcgGCGAgGGAGAU-UGCCg -3' miRNA: 3'- -CGCGACU--------------UCa--UGCU-CCUCUAcAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 25617 | 0.67 | 0.982363 |
Target: 5'- -gGCUGAGGUGCGAGGcGcgGUc--- -3' miRNA: 3'- cgCGACUUCAUGCUCCuCuaCAugga -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 27244 | 0.68 | 0.972558 |
Target: 5'- gGCGcCUGggGUG-GGGcGGGGUGUGCg- -3' miRNA: 3'- -CGC-GACuuCAUgCUC-CUCUACAUGga -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 32079 | 0.66 | 0.992889 |
Target: 5'- gGCGCUGggGcuCGGGGAGccGgACUUc -3' miRNA: 3'- -CGCGACuuCauGCUCCUCuaCaUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 32793 | 0.69 | 0.95128 |
Target: 5'- cGCGCUGuacGGcGCGAGcGAGAccUACCUg -3' miRNA: 3'- -CGCGACu--UCaUGCUC-CUCUacAUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 34491 | 0.67 | 0.977859 |
Target: 5'- gGUGCUGGAGUGgguCGAGGGcgcucuGGUGggcACCUu -3' miRNA: 3'- -CGCGACUUCAU---GCUCCU------CUACa--UGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 34620 | 0.68 | 0.975312 |
Target: 5'- cGCGCUGGAGccccugauagGCGAGGAGGcccccgcguucgUGcgcaGCCUg -3' miRNA: 3'- -CGCGACUUCa---------UGCUCCUCU------------ACa---UGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 34878 | 0.68 | 0.975312 |
Target: 5'- -aGCUGggGgagcgGCGcgcGGAGcUGUACCg -3' miRNA: 3'- cgCGACuuCa----UGCu--CCUCuACAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 35568 | 0.67 | 0.984338 |
Target: 5'- gGCGCUGGGcgccGCgGAGGAGGUGcugcggGCCg -3' miRNA: 3'- -CGCGACUUca--UG-CUCCUCUACa-----UGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 35837 | 0.67 | 0.982363 |
Target: 5'- aGCGCUGGc--GCGAGGAGcUGcgcGCCg -3' miRNA: 3'- -CGCGACUucaUGCUCCUCuACa--UGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 37606 | 0.66 | 0.992889 |
Target: 5'- cGCGCgccuGUGCGAGcGGGAccUGcACCUg -3' miRNA: 3'- -CGCGacuuCAUGCUC-CUCU--ACaUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 39240 | 0.66 | 0.992889 |
Target: 5'- aCGCUGAAGauugcCGAGGAcGAcGUGCUc -3' miRNA: 3'- cGCGACUUCau---GCUCCU-CUaCAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 45028 | 0.66 | 0.992889 |
Target: 5'- cGCuGCUGGAGccCGAGGcuGUGUACa- -3' miRNA: 3'- -CG-CGACUUCauGCUCCucUACAUGga -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 51909 | 0.77 | 0.618759 |
Target: 5'- cGCGCUGAAGUACGuggccagcacgcuGGAGGgcgacGUGCCc -3' miRNA: 3'- -CGCGACUUCAUGCu------------CCUCUa----CAUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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