miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 5' -50.8 NC_005261.1 + 11474 0.74 0.778416
Target:  5'- gGCGCgGAGGgGCGGGGcGGggGUGCCg -3'
miRNA:   3'- -CGCGaCUUCaUGCUCC-UCuaCAUGGa -5'
23583 5' -50.8 NC_005261.1 + 13280 0.66 0.989264
Target:  5'- aCGCUGuuGUugGCGGGGcgcAGGUGUGCg- -3'
miRNA:   3'- cGCGACuuCA--UGCUCC---UCUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 13660 0.67 0.983764
Target:  5'- aGCGCgu-GGUGCGcgagcggcgcgccuGGGAGAUG-GCCg -3'
miRNA:   3'- -CGCGacuUCAUGC--------------UCCUCUACaUGGa -5'
23583 5' -50.8 NC_005261.1 + 13832 0.72 0.842128
Target:  5'- gGCGCUGcAGUACcggcuGGGGGUGggggGCCUg -3'
miRNA:   3'- -CGCGACuUCAUGcu---CCUCUACa---UGGA- -5'
23583 5' -50.8 NC_005261.1 + 14689 0.71 0.895782
Target:  5'- uCGCUGAuGGUgGCGAGGGGggGcGCCUu -3'
miRNA:   3'- cGCGACU-UCA-UGCUCCUCuaCaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 14948 0.7 0.937337
Target:  5'- gGCGCUGGAa-GCGAGcGGgcGUGCCUg -3'
miRNA:   3'- -CGCGACUUcaUGCUCcUCuaCAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 22331 0.67 0.977116
Target:  5'- gGCGCUGAcgacggcggggaggAGgcgGCGAgGGAGAU-UGCCg -3'
miRNA:   3'- -CGCGACU--------------UCa--UGCU-CCUCUAcAUGGa -5'
23583 5' -50.8 NC_005261.1 + 25617 0.67 0.982363
Target:  5'- -gGCUGAGGUGCGAGGcGcgGUc--- -3'
miRNA:   3'- cgCGACUUCAUGCUCCuCuaCAugga -5'
23583 5' -50.8 NC_005261.1 + 27244 0.68 0.972558
Target:  5'- gGCGcCUGggGUG-GGGcGGGGUGUGCg- -3'
miRNA:   3'- -CGC-GACuuCAUgCUC-CUCUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 32079 0.66 0.992889
Target:  5'- gGCGCUGggGcuCGGGGAGccGgACUUc -3'
miRNA:   3'- -CGCGACuuCauGCUCCUCuaCaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 32793 0.69 0.95128
Target:  5'- cGCGCUGuacGGcGCGAGcGAGAccUACCUg -3'
miRNA:   3'- -CGCGACu--UCaUGCUC-CUCUacAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 34491 0.67 0.977859
Target:  5'- gGUGCUGGAGUGgguCGAGGGcgcucuGGUGggcACCUu -3'
miRNA:   3'- -CGCGACUUCAU---GCUCCU------CUACa--UGGA- -5'
23583 5' -50.8 NC_005261.1 + 34620 0.68 0.975312
Target:  5'- cGCGCUGGAGccccugauagGCGAGGAGGcccccgcguucgUGcgcaGCCUg -3'
miRNA:   3'- -CGCGACUUCa---------UGCUCCUCU------------ACa---UGGA- -5'
23583 5' -50.8 NC_005261.1 + 34878 0.68 0.975312
Target:  5'- -aGCUGggGgagcgGCGcgcGGAGcUGUACCg -3'
miRNA:   3'- cgCGACuuCa----UGCu--CCUCuACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 35568 0.67 0.984338
Target:  5'- gGCGCUGGGcgccGCgGAGGAGGUGcugcggGCCg -3'
miRNA:   3'- -CGCGACUUca--UG-CUCCUCUACa-----UGGa -5'
23583 5' -50.8 NC_005261.1 + 35837 0.67 0.982363
Target:  5'- aGCGCUGGc--GCGAGGAGcUGcgcGCCg -3'
miRNA:   3'- -CGCGACUucaUGCUCCUCuACa--UGGa -5'
23583 5' -50.8 NC_005261.1 + 37606 0.66 0.992889
Target:  5'- cGCGCgccuGUGCGAGcGGGAccUGcACCUg -3'
miRNA:   3'- -CGCGacuuCAUGCUC-CUCU--ACaUGGA- -5'
23583 5' -50.8 NC_005261.1 + 39240 0.66 0.992889
Target:  5'- aCGCUGAAGauugcCGAGGAcGAcGUGCUc -3'
miRNA:   3'- cGCGACUUCau---GCUCCU-CUaCAUGGa -5'
23583 5' -50.8 NC_005261.1 + 45028 0.66 0.992889
Target:  5'- cGCuGCUGGAGccCGAGGcuGUGUACa- -3'
miRNA:   3'- -CG-CGACUUCauGCUCCucUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 51909 0.77 0.618759
Target:  5'- cGCGCUGAAGUACGuggccagcacgcuGGAGGgcgacGUGCCc -3'
miRNA:   3'- -CGCGACUUCAUGCu------------CCUCUa----CAUGGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.