Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23583 | 5' | -50.8 | NC_005261.1 | + | 56966 | 0.67 | 0.985079 |
Target: 5'- cGCGCaGgcGgcCGGGGAGAacucgcgcuuuuacgUGUGCCc -3' miRNA: 3'- -CGCGaCuuCauGCUCCUCU---------------ACAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 22331 | 0.67 | 0.977116 |
Target: 5'- gGCGCUGAcgacggcggggaggAGgcgGCGAgGGAGAU-UGCCg -3' miRNA: 3'- -CGCGACU--------------UCa--UGCU-CCUCUAcAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 103526 | 0.67 | 0.982156 |
Target: 5'- cCGCUGAggcucgaGGUGCGAGGGGccc-ACCg -3' miRNA: 3'- cGCGACU-------UCAUGCUCCUCuacaUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 25617 | 0.67 | 0.982363 |
Target: 5'- -gGCUGAGGUGCGAGGcGcgGUc--- -3' miRNA: 3'- cgCGACUUCAUGCUCCuCuaCAugga -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 35837 | 0.67 | 0.982363 |
Target: 5'- aGCGCUGGc--GCGAGGAGcUGcgcGCCg -3' miRNA: 3'- -CGCGACUucaUGCUCCUCuACa--UGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 80858 | 0.67 | 0.982363 |
Target: 5'- aGCuGCUGGcgggcgucGGgccgcGCGGGGAGGUcGUGCCg -3' miRNA: 3'- -CG-CGACU--------UCa----UGCUCCUCUA-CAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 13660 | 0.67 | 0.983764 |
Target: 5'- aGCGCgu-GGUGCGcgagcggcgcgccuGGGAGAUG-GCCg -3' miRNA: 3'- -CGCGacuUCAUGC--------------UCCUCUACaUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 35568 | 0.67 | 0.984338 |
Target: 5'- gGCGCUGGGcgccGCgGAGGAGGUGcugcggGCCg -3' miRNA: 3'- -CGCGACUUca--UG-CUCCUCUACa-----UGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 81670 | 0.67 | 0.984338 |
Target: 5'- cCGCcGAGGUGCGAGaaGGAcGUGCCc -3' miRNA: 3'- cGCGaCUUCAUGCUCc-UCUaCAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 94226 | 0.68 | 0.975312 |
Target: 5'- cGCGCcGAAGccggGCuGGGAGGUGU-CCa -3' miRNA: 3'- -CGCGaCUUCa---UGcUCCUCUACAuGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 34878 | 0.68 | 0.975312 |
Target: 5'- -aGCUGggGgagcgGCGcgcGGAGcUGUACCg -3' miRNA: 3'- cgCGACuuCa----UGCu--CCUCuACAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 131761 | 0.68 | 0.972558 |
Target: 5'- gGCGcCUGggGUG-GGGcGGGGUGUGCg- -3' miRNA: 3'- -CGC-GACuuCAUgCUC-CUCUACAUGga -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 115991 | 0.74 | 0.778416 |
Target: 5'- gGCGCgGAGGgGCGGGGcGGggGUGCCg -3' miRNA: 3'- -CGCGaCUUCaUGCUCC-UCuaCAUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 13832 | 0.72 | 0.842128 |
Target: 5'- gGCGCUGcAGUACcggcuGGGGGUGggggGCCUg -3' miRNA: 3'- -CGCGACuUCAUGcu---CCUCUACa---UGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 57955 | 0.69 | 0.94224 |
Target: 5'- cGUGCUGucGgGCGGccuGGAGAcGUACCUg -3' miRNA: 3'- -CGCGACuuCaUGCU---CCUCUaCAUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 102646 | 0.69 | 0.946433 |
Target: 5'- gGCGCUGggGUccggGCGAuGGAGGauagcgcggcggcUGcUGCCg -3' miRNA: 3'- -CGCGACuuCA----UGCU-CCUCU-------------AC-AUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 32793 | 0.69 | 0.95128 |
Target: 5'- cGCGCUGuacGGcGCGAGcGAGAccUACCUg -3' miRNA: 3'- -CGCGACu--UCaUGCUC-CUCUacAUGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 126066 | 0.68 | 0.962977 |
Target: 5'- gGCGCUGGccuGUGCGGGGcu-UGggGCCUg -3' miRNA: 3'- -CGCGACUu--CAUGCUCCucuACa-UGGA- -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 71566 | 0.68 | 0.966397 |
Target: 5'- gGCGCUGggGcUGCucgcgGAGGAGGcg-GCCg -3' miRNA: 3'- -CGCGACuuC-AUG-----CUCCUCUacaUGGa -5' |
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23583 | 5' | -50.8 | NC_005261.1 | + | 85570 | 0.68 | 0.969896 |
Target: 5'- cCGCUcGAAGUGCGcgcggggccgggggcGGAGAcgUGUACCg -3' miRNA: 3'- cGCGA-CUUCAUGCu--------------CCUCU--ACAUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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