miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 5' -50.8 NC_005261.1 + 103526 0.67 0.982156
Target:  5'- cCGCUGAggcucgaGGUGCGAGGGGccc-ACCg -3'
miRNA:   3'- cGCGACU-------UCAUGCUCCUCuacaUGGa -5'
23583 5' -50.8 NC_005261.1 + 115054 0.67 0.977859
Target:  5'- gGCGaaGggGgGCGGGGuggGGAUGUGCUUc -3'
miRNA:   3'- -CGCgaCuuCaUGCUCC---UCUACAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 34491 0.67 0.977859
Target:  5'- gGUGCUGGAGUGgguCGAGGGcgcucuGGUGggcACCUu -3'
miRNA:   3'- -CGCGACUUCAU---GCUCCU------CUACa--UGGA- -5'
23583 5' -50.8 NC_005261.1 + 22331 0.67 0.977116
Target:  5'- gGCGCUGAcgacggcggggaggAGgcgGCGAgGGAGAU-UGCCg -3'
miRNA:   3'- -CGCGACU--------------UCa--UGCU-CCUCUAcAUGGa -5'
23583 5' -50.8 NC_005261.1 + 34620 0.68 0.975312
Target:  5'- cGCGCUGGAGccccugauagGCGAGGAGGcccccgcguucgUGcgcaGCCUg -3'
miRNA:   3'- -CGCGACUUCa---------UGCUCCUCU------------ACa---UGGA- -5'
23583 5' -50.8 NC_005261.1 + 109677 0.68 0.975312
Target:  5'- gGUGCUGAGcggACGAGGGacGAUGgccgcGCCUa -3'
miRNA:   3'- -CGCGACUUca-UGCUCCU--CUACa----UGGA- -5'
23583 5' -50.8 NC_005261.1 + 34878 0.68 0.975312
Target:  5'- -aGCUGggGgagcgGCGcgcGGAGcUGUACCg -3'
miRNA:   3'- cgCGACuuCa----UGCu--CCUCuACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 94226 0.68 0.975312
Target:  5'- cGCGCcGAAGccggGCuGGGAGGUGU-CCa -3'
miRNA:   3'- -CGCGaCUUCa---UGcUCCUCUACAuGGa -5'
23583 5' -50.8 NC_005261.1 + 131761 0.68 0.972558
Target:  5'- gGCGcCUGggGUG-GGGcGGGGUGUGCg- -3'
miRNA:   3'- -CGC-GACuuCAUgCUC-CUCUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 27244 0.68 0.972558
Target:  5'- gGCGcCUGggGUG-GGGcGGGGUGUGCg- -3'
miRNA:   3'- -CGC-GACuuCAUgCUC-CUCUACAUGga -5'
23583 5' -50.8 NC_005261.1 + 85570 0.68 0.969896
Target:  5'- cCGCUcGAAGUGCGcgcggggccgggggcGGAGAcgUGUACCg -3'
miRNA:   3'- cGCGA-CUUCAUGCu--------------CCUCU--ACAUGGa -5'
23583 5' -50.8 NC_005261.1 + 115322 0.68 0.966397
Target:  5'- uGCGCgaucggGggGUACcGGGAcGUGUACUUc -3'
miRNA:   3'- -CGCGa-----CuuCAUGcUCCUcUACAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 78523 0.68 0.966397
Target:  5'- gGCGCgagcgGAGGcgGCGAGGGGAagggGaGCCg -3'
miRNA:   3'- -CGCGa----CUUCa-UGCUCCUCUa---CaUGGa -5'
23583 5' -50.8 NC_005261.1 + 71566 0.68 0.966397
Target:  5'- gGCGCUGggGcUGCucgcgGAGGAGGcg-GCCg -3'
miRNA:   3'- -CGCGACuuC-AUG-----CUCCUCUacaUGGa -5'
23583 5' -50.8 NC_005261.1 + 126066 0.68 0.962977
Target:  5'- gGCGCUGGccuGUGCGGGGcu-UGggGCCUg -3'
miRNA:   3'- -CGCGACUu--CAUGCUCCucuACa-UGGA- -5'
23583 5' -50.8 NC_005261.1 + 112671 0.69 0.955423
Target:  5'- aGCgGCUGGAGcGCGAGGGGcUGggcgucgagGCCg -3'
miRNA:   3'- -CG-CGACUUCaUGCUCCUCuACa--------UGGa -5'
23583 5' -50.8 NC_005261.1 + 32793 0.69 0.95128
Target:  5'- cGCGCUGuacGGcGCGAGcGAGAccUACCUg -3'
miRNA:   3'- -CGCGACu--UCaUGCUC-CUCUacAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 102646 0.69 0.946433
Target:  5'- gGCGCUGggGUccggGCGAuGGAGGauagcgcggcggcUGcUGCCg -3'
miRNA:   3'- -CGCGACuuCA----UGCU-CCUCU-------------AC-AUGGa -5'
23583 5' -50.8 NC_005261.1 + 57955 0.69 0.94224
Target:  5'- cGUGCUGucGgGCGGccuGGAGAcGUACCUg -3'
miRNA:   3'- -CGCGACuuCaUGCU---CCUCUaCAUGGA- -5'
23583 5' -50.8 NC_005261.1 + 76173 0.7 0.937337
Target:  5'- gGCGCUGcAGUACGAGcGGGGccugggcGUGCUg -3'
miRNA:   3'- -CGCGACuUCAUGCUC-CUCUa------CAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.