miRNA display CGI


Results 41 - 60 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 65779 0.75 0.281637
Target:  5'- uCGcCGCG-CUCGCCGCGGG-CGCCcccGCc -3'
miRNA:   3'- -GC-GUGCuGAGCGGCGCCCaGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 37438 0.75 0.281637
Target:  5'- gCGCGCgGGCUCGCCgaagauauaagGCGGGugcUCGCCgGCa -3'
miRNA:   3'- -GCGUG-CUGAGCGG-----------CGCCC---AGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 118172 0.75 0.281637
Target:  5'- gGCGgGGCUUgccgucuggGCCGCGGGccccgCGCCUGCc -3'
miRNA:   3'- gCGUgCUGAG---------CGGCGCCCa----GUGGACG- -5'
23584 3' -60 NC_005261.1 + 29013 0.75 0.288107
Target:  5'- gCGCGCGGCgUGCCGCGccuacgagCGCCUGCg -3'
miRNA:   3'- -GCGUGCUGaGCGGCGCcca-----GUGGACG- -5'
23584 3' -60 NC_005261.1 + 104109 0.74 0.294694
Target:  5'- cCGCGCGACcgcaGCCGCGcGGuUCGCC-GCg -3'
miRNA:   3'- -GCGUGCUGag--CGGCGC-CC-AGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 19532 0.74 0.295359
Target:  5'- aGCACGGCccgcgucaccgccagCGCCGUGGGgagCGCCaGCg -3'
miRNA:   3'- gCGUGCUGa--------------GCGGCGCCCa--GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 62810 0.74 0.301398
Target:  5'- gGCugGGCcauaUCGCCGCGcGGggCACCgGCg -3'
miRNA:   3'- gCGugCUG----AGCGGCGC-CCa-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 70743 0.74 0.301398
Target:  5'- aCGCGCGGCUggcggcgGCCGCGGGcuuCCUGUa -3'
miRNA:   3'- -GCGUGCUGAg------CGGCGCCCaguGGACG- -5'
23584 3' -60 NC_005261.1 + 90538 0.74 0.301398
Target:  5'- cCGC-CGACgcggCGCCGCGGGcgGCCgUGCu -3'
miRNA:   3'- -GCGuGCUGa---GCGGCGCCCagUGG-ACG- -5'
23584 3' -60 NC_005261.1 + 82795 0.74 0.308219
Target:  5'- aGCGCcaGCUcCGCCGCGGc-CACCUGCa -3'
miRNA:   3'- gCGUGc-UGA-GCGGCGCCcaGUGGACG- -5'
23584 3' -60 NC_005261.1 + 53654 0.74 0.308219
Target:  5'- uCGCagGCGGcCUgGCCGCGGGUCGCg-GCc -3'
miRNA:   3'- -GCG--UGCU-GAgCGGCGCCCAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 35751 0.74 0.322212
Target:  5'- gGCGCGGCggcgCGCCGagGaGGUCcggcGCCUGCg -3'
miRNA:   3'- gCGUGCUGa---GCGGCg-C-CCAG----UGGACG- -5'
23584 3' -60 NC_005261.1 + 31931 0.74 0.329384
Target:  5'- cCGCugGGCUCuGCCGCGGcGcCaACgUGCg -3'
miRNA:   3'- -GCGugCUGAG-CGGCGCC-CaG-UGgACG- -5'
23584 3' -60 NC_005261.1 + 45621 0.73 0.336674
Target:  5'- gGCGCGGCgcggCGCgGCGGGcccgCGCCggaGCa -3'
miRNA:   3'- gCGUGCUGa---GCGgCGCCCa---GUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 59062 0.73 0.336674
Target:  5'- gCGCGCGGCcgcggagagCGCgCGCGGGUgCGCC-GCg -3'
miRNA:   3'- -GCGUGCUGa--------GCG-GCGCCCA-GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 75285 0.73 0.336674
Target:  5'- cCGCgACGcCUCGCCgguGCGGGgcuGCCUGCc -3'
miRNA:   3'- -GCG-UGCuGAGCGG---CGCCCag-UGGACG- -5'
23584 3' -60 NC_005261.1 + 125710 0.73 0.336674
Target:  5'- gGCgACGGC-CGCCGCGGGcUCGgCUGg -3'
miRNA:   3'- gCG-UGCUGaGCGGCGCCC-AGUgGACg -5'
23584 3' -60 NC_005261.1 + 35463 0.73 0.336674
Target:  5'- gGCGCGGCgcgCGCgCGUcccgGGGUC-CCUGCc -3'
miRNA:   3'- gCGUGCUGa--GCG-GCG----CCCAGuGGACG- -5'
23584 3' -60 NC_005261.1 + 93675 0.73 0.344081
Target:  5'- gCGgGCGGCggCGCCgGCGGGgCGCCgGCg -3'
miRNA:   3'- -GCgUGCUGa-GCGG-CGCCCaGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 133150 0.73 0.344081
Target:  5'- uGCGCG-CUCGCCGCcgucGGcGUCGCC-GCc -3'
miRNA:   3'- gCGUGCuGAGCGGCG----CC-CAGUGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.