miRNA display CGI


Results 61 - 80 of 557 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 3' -60 NC_005261.1 + 57423 0.66 0.749087
Target:  5'- gCGCugGGCUCGgCG-GGGcUCuACC-GCa -3'
miRNA:   3'- -GCGugCUGAGCgGCgCCC-AG-UGGaCG- -5'
23584 3' -60 NC_005261.1 + 56737 0.66 0.749087
Target:  5'- gCGCGCGccgcGCUaGCCGCGGc---CCUGCu -3'
miRNA:   3'- -GCGUGC----UGAgCGGCGCCcaguGGACG- -5'
23584 3' -60 NC_005261.1 + 107810 0.66 0.740623
Target:  5'- gCGCGCGGCggcccuagcggccgcCGCCGCcucugcccGGUCGCCgccGCc -3'
miRNA:   3'- -GCGUGCUGa--------------GCGGCGc-------CCAGUGGa--CG- -5'
23584 3' -60 NC_005261.1 + 5624 0.66 0.739678
Target:  5'- gCGCccccugGCGGCUCGCCGggcCGGG-CGuCCgcggGCg -3'
miRNA:   3'- -GCG------UGCUGAGCGGC---GCCCaGU-GGa---CG- -5'
23584 3' -60 NC_005261.1 + 28975 0.66 0.739678
Target:  5'- uCGCugGACuUCGUgGCcccgcacuGGGcCGCgCUGCa -3'
miRNA:   3'- -GCGugCUG-AGCGgCG--------CCCaGUG-GACG- -5'
23584 3' -60 NC_005261.1 + 120315 0.66 0.739678
Target:  5'- gGCcCGACUCGCUGCuaaucGGcgccGUCGCCaaggGCa -3'
miRNA:   3'- gCGuGCUGAGCGGCG-----CC----CAGUGGa---CG- -5'
23584 3' -60 NC_005261.1 + 50536 0.66 0.739678
Target:  5'- uCGCACuGCUUGCgGCGcGGagcugcgacUCACCgcugGCg -3'
miRNA:   3'- -GCGUGcUGAGCGgCGC-CC---------AGUGGa---CG- -5'
23584 3' -60 NC_005261.1 + 93593 0.66 0.739678
Target:  5'- gCGCucgGCGAcCUCGCCGUcgccccGGGUCgcgacGCCgGCc -3'
miRNA:   3'- -GCG---UGCU-GAGCGGCG------CCCAG-----UGGaCG- -5'
23584 3' -60 NC_005261.1 + 63739 0.66 0.739678
Target:  5'- gCGCAUGGC-CGCgGCGGcGUaggcCGCCgUGUa -3'
miRNA:   3'- -GCGUGCUGaGCGgCGCC-CA----GUGG-ACG- -5'
23584 3' -60 NC_005261.1 + 128088 0.66 0.739678
Target:  5'- gGCAgGGCUgGCCGUGGcUCAUg-GCg -3'
miRNA:   3'- gCGUgCUGAgCGGCGCCcAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 46082 0.66 0.739678
Target:  5'- gCGCGCG-CUCGCCGa-GGUC-CUgGCc -3'
miRNA:   3'- -GCGUGCuGAGCGGCgcCCAGuGGaCG- -5'
23584 3' -60 NC_005261.1 + 83601 0.66 0.739678
Target:  5'- aGCGCGucgcuCUcCGCCGCGGcGUgGuCCaGCg -3'
miRNA:   3'- gCGUGCu----GA-GCGGCGCC-CAgU-GGaCG- -5'
23584 3' -60 NC_005261.1 + 23571 0.66 0.739678
Target:  5'- gGCAgGGCUgGCCGUGGcUCAUg-GCg -3'
miRNA:   3'- gCGUgCUGAgCGGCGCCcAGUGgaCG- -5'
23584 3' -60 NC_005261.1 + 13479 0.66 0.739678
Target:  5'- uGCACGuCUCGUagaUGCGGacgagcgcgcaGUCGCCgGCc -3'
miRNA:   3'- gCGUGCuGAGCG---GCGCC-----------CAGUGGaCG- -5'
23584 3' -60 NC_005261.1 + 111349 0.66 0.739678
Target:  5'- aGC-CGGCgcCGaCCGCGcGUCugCUGCc -3'
miRNA:   3'- gCGuGCUGa-GC-GGCGCcCAGugGACG- -5'
23584 3' -60 NC_005261.1 + 100058 0.66 0.739678
Target:  5'- aGCGCGccGC-CGCCGCccgGGGgcgCGCC-GCg -3'
miRNA:   3'- gCGUGC--UGaGCGGCG---CCCa--GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 120241 0.66 0.739678
Target:  5'- aGCGCcGCUuCGCCGCGGcugccaCGCCgGCc -3'
miRNA:   3'- gCGUGcUGA-GCGGCGCCca----GUGGaCG- -5'
23584 3' -60 NC_005261.1 + 122398 0.66 0.739678
Target:  5'- aGCGCG-CUCGCgaUGCGGuGcCugUUGCu -3'
miRNA:   3'- gCGUGCuGAGCG--GCGCC-CaGugGACG- -5'
23584 3' -60 NC_005261.1 + 95738 0.66 0.739678
Target:  5'- gGCGCGACgcgcgUCGCCGCGcaaaacGUCuACCUaaaGCu -3'
miRNA:   3'- gCGUGCUG-----AGCGGCGCc-----CAG-UGGA---CG- -5'
23584 3' -60 NC_005261.1 + 32938 0.66 0.739678
Target:  5'- cCGCGCucGCgCGCC-CGGGcUCGCCgGCg -3'
miRNA:   3'- -GCGUGc-UGaGCGGcGCCC-AGUGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.