miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 5' -59.9 NC_005261.1 + 107964 0.66 0.70754
Target:  5'- gCGGGCgc-GCggGCC-GCcGCGCCGCGc -3'
miRNA:   3'- -GCCCGacuCGa-UGGaCGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 132774 0.66 0.70754
Target:  5'- gGGGCUGcucggGGggGCgCUGUUGCcgccGCCGCGg -3'
miRNA:   3'- gCCCGAC-----UCgaUG-GACGACG----UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 20691 0.66 0.70754
Target:  5'- gCGuGGUUGAcgGCUacaACCUGCUGaacucggGCCGCGc -3'
miRNA:   3'- -GC-CCGACU--CGA---UGGACGACg------UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 2714 0.66 0.70754
Target:  5'- cCGGGCcccUGgccccGGCcgACUUGCgcuUGCGCCGCGg -3'
miRNA:   3'- -GCCCG---AC-----UCGa-UGGACG---ACGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 3447 0.66 0.70754
Target:  5'- gCGGGCgc-GCggGCC-GCcGCGCCGCGc -3'
miRNA:   3'- -GCCCGacuCGa-UGGaCGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 60142 0.66 0.70754
Target:  5'- aCGGGCUcccaGGCg--CUGCagGCGCCGCu -3'
miRNA:   3'- -GCCCGAc---UCGaugGACGa-CGUGGCGu -5'
23585 5' -59.9 NC_005261.1 + 39200 0.66 0.70754
Target:  5'- gCGGGUgcugUGGGCgcgcGCC-GCcGCGCCGCc -3'
miRNA:   3'- -GCCCG----ACUCGa---UGGaCGaCGUGGCGu -5'
23585 5' -59.9 NC_005261.1 + 106959 0.66 0.70754
Target:  5'- cCGGGCgc-GCUccGCCUcgGCgcgcGCGCCGCGc -3'
miRNA:   3'- -GCCCGacuCGA--UGGA--CGa---CGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 127914 0.66 0.70754
Target:  5'- uGGGCuUGGGCUcggGCCcGCucgaUGCGgCGCAc -3'
miRNA:   3'- gCCCG-ACUCGA---UGGaCG----ACGUgGCGU- -5'
23585 5' -59.9 NC_005261.1 + 69699 0.66 0.70754
Target:  5'- gGGGCgcgcGGGC-GCCgGCgGCGCCgGCAg -3'
miRNA:   3'- gCCCGa---CUCGaUGGaCGaCGUGG-CGU- -5'
23585 5' -59.9 NC_005261.1 + 36477 0.66 0.70754
Target:  5'- gCGGGCgugcaccugGAGCUGCCgaGCgagGCccugAUCGCGg -3'
miRNA:   3'- -GCCCGa--------CUCGAUGGa-CGa--CG----UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 107231 0.66 0.70754
Target:  5'- cCGGGCcccUGgccccGGCcgACUUGCgcuUGCGCCGCGg -3'
miRNA:   3'- -GCCCG---AC-----UCGa-UGGACG---ACGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 17151 0.66 0.70754
Target:  5'- aGGcGCUG-GCgGCC-GCcgGCGCCGCGc -3'
miRNA:   3'- gCC-CGACuCGaUGGaCGa-CGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 28257 0.66 0.70754
Target:  5'- gGGGCUGcucggGGggGCgCUGUUGCcgccGCCGCGg -3'
miRNA:   3'- gCCCGAC-----UCgaUG-GACGACG----UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 14980 0.66 0.70754
Target:  5'- aCGGGCgaUGGGCgggGCCcGCgccuggGCgGCCGCu -3'
miRNA:   3'- -GCCCG--ACUCGa--UGGaCGa-----CG-UGGCGu -5'
23585 5' -59.9 NC_005261.1 + 29087 0.66 0.70754
Target:  5'- uGGuGCUGuGGC-GCCUGCcugGgGCCGCGc -3'
miRNA:   3'- gCC-CGAC-UCGaUGGACGa--CgUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 37600 0.66 0.703559
Target:  5'- gCGGGCcgcgcgccugugcGAGCgggACCUGCaccUGCgcgGCCGCGu -3'
miRNA:   3'- -GCCCGa------------CUCGa--UGGACG---ACG---UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 77145 0.66 0.697569
Target:  5'- gGcGGCcGAGCUGCCcGUgaGCGCCgGCAg -3'
miRNA:   3'- gC-CCGaCUCGAUGGaCGa-CGUGG-CGU- -5'
23585 5' -59.9 NC_005261.1 + 127775 0.66 0.697569
Target:  5'- uCGGGCgaGAGCUGCa-GCaGCGCCucccaGCAc -3'
miRNA:   3'- -GCCCGa-CUCGAUGgaCGaCGUGG-----CGU- -5'
23585 5' -59.9 NC_005261.1 + 7563 0.66 0.697569
Target:  5'- gCGGGCagGGGCUcGCCgaGgaGCAgCGCGu -3'
miRNA:   3'- -GCCCGa-CUCGA-UGGa-CgaCGUgGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.