miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 5' -59.9 NC_005261.1 + 77145 0.66 0.697569
Target:  5'- gGcGGCcGAGCUGCCcGUgaGCGCCgGCAg -3'
miRNA:   3'- gC-CCGaCUCGAUGGaCGa-CGUGG-CGU- -5'
23585 5' -59.9 NC_005261.1 + 135576 0.66 0.667365
Target:  5'- gCGcGGCggGAGCcGCC-GCUGC-CCGCc -3'
miRNA:   3'- -GC-CCGa-CUCGaUGGaCGACGuGGCGu -5'
23585 5' -59.9 NC_005261.1 + 74088 0.66 0.65723
Target:  5'- gCGGGCUGGGCcaggacgcGCUggcgGCcGCGCgGCAc -3'
miRNA:   3'- -GCCCGACUCGa-------UGGa---CGaCGUGgCGU- -5'
23585 5' -59.9 NC_005261.1 + 104750 0.66 0.697569
Target:  5'- gCGGGCcccgcGAGCggGCCcgGCUGCgGCgGCGg -3'
miRNA:   3'- -GCCCGa----CUCGa-UGGa-CGACG-UGgCGU- -5'
23585 5' -59.9 NC_005261.1 + 71912 0.66 0.687543
Target:  5'- uGGGCUGcacGGCcGCCUcggugGCcGUGCCGCGc -3'
miRNA:   3'- gCCCGAC---UCGaUGGA-----CGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 80842 0.66 0.697569
Target:  5'- aCGGGCgcgcuccccGAGCUGCUggcggGCgucGgGCCGCGc -3'
miRNA:   3'- -GCCCGa--------CUCGAUGGa----CGa--CgUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 37600 0.66 0.703559
Target:  5'- gCGGGCcgcgcgccugugcGAGCgggACCUGCaccUGCgcgGCCGCGu -3'
miRNA:   3'- -GCCCGa------------CUCGa--UGGACG---ACG---UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 31490 0.66 0.697569
Target:  5'- gCGGGCgcgGAGgcGCCgggGCUGCacgagguggGCCGCu -3'
miRNA:   3'- -GCCCGa--CUCgaUGGa--CGACG---------UGGCGu -5'
23585 5' -59.9 NC_005261.1 + 52891 0.66 0.687543
Target:  5'- gGGcGCUGGGCUuUCUGgUGaagcaguucCACCGCAa -3'
miRNA:   3'- gCC-CGACUCGAuGGACgAC---------GUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 7563 0.66 0.697569
Target:  5'- gCGGGCagGGGCUcGCCgaGgaGCAgCGCGu -3'
miRNA:   3'- -GCCCGa-CUCGA-UGGa-CgaCGUgGCGU- -5'
23585 5' -59.9 NC_005261.1 + 58225 0.66 0.65723
Target:  5'- gCGGGUgaccaccgUGAGCUcgGCCgaguucGCgGCGCUGCAg -3'
miRNA:   3'- -GCCCG--------ACUCGA--UGGa-----CGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 132774 0.66 0.70754
Target:  5'- gGGGCUGcucggGGggGCgCUGUUGCcgccGCCGCGg -3'
miRNA:   3'- gCCCGAC-----UCgaUG-GACGACG----UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 10946 0.66 0.65723
Target:  5'- gCGGGgaGGGCUGCCcccgcgGCgggcggGCccGCCGUAg -3'
miRNA:   3'- -GCCCgaCUCGAUGGa-----CGa-----CG--UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 17964 0.66 0.697569
Target:  5'- cCGGGC-GGGCgguagacgGCCgGCgugGCAgCCGCGg -3'
miRNA:   3'- -GCCCGaCUCGa-------UGGaCGa--CGU-GGCGU- -5'
23585 5' -59.9 NC_005261.1 + 43054 0.66 0.697569
Target:  5'- aGGGCUgGGGCacgucccCCUcGCcGCACUGCAg -3'
miRNA:   3'- gCCCGA-CUCGau-----GGA-CGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 58084 0.66 0.65723
Target:  5'- gGGGCUGuucGCcGCCggugguaGCgGCGCCGCc -3'
miRNA:   3'- gCCCGACu--CGaUGGa------CGaCGUGGCGu -5'
23585 5' -59.9 NC_005261.1 + 57420 0.66 0.687543
Target:  5'- aCGGcGCUGGGCUcgGCgggGCUcUACCGCAc -3'
miRNA:   3'- -GCC-CGACUCGA--UGga-CGAcGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 70910 0.66 0.677473
Target:  5'- uGcGGCUGAGCgcggcggcgGCCgacgGCgGCGCgCGCGc -3'
miRNA:   3'- gC-CCGACUCGa--------UGGa---CGaCGUG-GCGU- -5'
23585 5' -59.9 NC_005261.1 + 127775 0.66 0.697569
Target:  5'- uCGGGCgaGAGCUGCa-GCaGCGCCucccaGCAc -3'
miRNA:   3'- -GCCCGa-CUCGAUGgaCGaCGUGG-----CGU- -5'
23585 5' -59.9 NC_005261.1 + 93445 0.66 0.677473
Target:  5'- -nGGCUGcGGCUGCg-GCUGCgGCUGCGg -3'
miRNA:   3'- gcCCGAC-UCGAUGgaCGACG-UGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.