miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 5' -59.9 NC_005261.1 + 104750 0.66 0.697569
Target:  5'- gCGGGCcccgcGAGCggGCCcgGCUGCgGCgGCGg -3'
miRNA:   3'- -GCCCGa----CUCGa-UGGa-CGACG-UGgCGU- -5'
23585 5' -59.9 NC_005261.1 + 80842 0.66 0.697569
Target:  5'- aCGGGCgcgcuccccGAGCUGCUggcggGCgucGgGCCGCGc -3'
miRNA:   3'- -GCCCGa--------CUCGAUGGa----CGa--CgUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 31490 0.66 0.697569
Target:  5'- gCGGGCgcgGAGgcGCCgggGCUGCacgagguggGCCGCu -3'
miRNA:   3'- -GCCCGa--CUCgaUGGa--CGACG---------UGGCGu -5'
23585 5' -59.9 NC_005261.1 + 97097 0.66 0.697569
Target:  5'- uGGGCcggGGGCgccagccggGCCgcgGCcggagGCGCCGCGg -3'
miRNA:   3'- gCCCGa--CUCGa--------UGGa--CGa----CGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 137915 0.66 0.697569
Target:  5'- gCGGGCcccgcGAGCggGCCcgGCUGCgGCgGCGg -3'
miRNA:   3'- -GCCCGa----CUCGa-UGGa-CGACG-UGgCGU- -5'
23585 5' -59.9 NC_005261.1 + 23258 0.66 0.697569
Target:  5'- uCGGGCgaGAGCUGCa-GCaGCGCCucccaGCAc -3'
miRNA:   3'- -GCCCGa-CUCGAUGgaCGaCGUGG-----CGU- -5'
23585 5' -59.9 NC_005261.1 + 55739 0.66 0.697569
Target:  5'- gCGGGCgu-GCUGCCggacgGCcucgacgcGCGCCGCc -3'
miRNA:   3'- -GCCCGacuCGAUGGa----CGa-------CGUGGCGu -5'
23585 5' -59.9 NC_005261.1 + 232 0.66 0.697569
Target:  5'- gCGGGCcccgcGAGCggGCCcgGCUGCgGCgGCGg -3'
miRNA:   3'- -GCCCGa----CUCGa-UGGa-CGACG-UGgCGU- -5'
23585 5' -59.9 NC_005261.1 + 7563 0.66 0.697569
Target:  5'- gCGGGCagGGGCUcGCCgaGgaGCAgCGCGu -3'
miRNA:   3'- -GCCCGa-CUCGA-UGGa-CgaCGUgGCGU- -5'
23585 5' -59.9 NC_005261.1 + 43054 0.66 0.697569
Target:  5'- aGGGCUgGGGCacgucccCCUcGCcGCACUGCAg -3'
miRNA:   3'- gCCCGA-CUCGau-----GGA-CGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 77145 0.66 0.697569
Target:  5'- gGcGGCcGAGCUGCCcGUgaGCGCCgGCAg -3'
miRNA:   3'- gC-CCGaCUCGAUGGaCGa-CGUGG-CGU- -5'
23585 5' -59.9 NC_005261.1 + 95644 0.66 0.687543
Target:  5'- uGGGC-GAGCgcgACgC-GCgGCGCCGCGa -3'
miRNA:   3'- gCCCGaCUCGa--UG-GaCGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 57420 0.66 0.687543
Target:  5'- aCGGcGCUGGGCUcgGCgggGCUcUACCGCAc -3'
miRNA:   3'- -GCC-CGACUCGA--UGga-CGAcGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 123420 0.66 0.687543
Target:  5'- gGGGC-GGGCUcGCCacggGCcGCAgCCGCAg -3'
miRNA:   3'- gCCCGaCUCGA-UGGa---CGaCGU-GGCGU- -5'
23585 5' -59.9 NC_005261.1 + 84554 0.66 0.687543
Target:  5'- gCGGGCccAGC-GCCUGgaGCACgGCc -3'
miRNA:   3'- -GCCCGacUCGaUGGACgaCGUGgCGu -5'
23585 5' -59.9 NC_005261.1 + 71912 0.66 0.687543
Target:  5'- uGGGCUGcacGGCcGCCUcggugGCcGUGCCGCGc -3'
miRNA:   3'- gCCCGAC---UCGaUGGA-----CGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 83052 0.66 0.687543
Target:  5'- gCGGGaggGGGCUcCCUGC-GCGCCcccGCGg -3'
miRNA:   3'- -GCCCga-CUCGAuGGACGaCGUGG---CGU- -5'
23585 5' -59.9 NC_005261.1 + 52891 0.66 0.687543
Target:  5'- gGGcGCUGGGCUuUCUGgUGaagcaguucCACCGCAa -3'
miRNA:   3'- gCC-CGACUCGAuGGACgAC---------GUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 120307 0.66 0.687543
Target:  5'- aGGGCggcGAgGCUGUCUGCgaggcGCGCUGCGu -3'
miRNA:   3'- gCCCGa--CU-CGAUGGACGa----CGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 93445 0.66 0.677473
Target:  5'- -nGGCUGcGGCUGCg-GCUGCgGCUGCGg -3'
miRNA:   3'- gcCCGAC-UCGAUGgaCGACG-UGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.