miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 5' -59.9 NC_005261.1 + 223 0.69 0.497385
Target:  5'- cCGGGCUGcgGGCcGCCgcaGCcGCcGCCGCAg -3'
miRNA:   3'- -GCCCGAC--UCGaUGGa--CGaCG-UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 232 0.66 0.697569
Target:  5'- gCGGGCcccgcGAGCggGCCcgGCUGCgGCgGCGg -3'
miRNA:   3'- -GCCCGa----CUCGa-UGGa-CGACG-UGgCGU- -5'
23585 5' -59.9 NC_005261.1 + 1742 0.74 0.278262
Target:  5'- uCGGcGCcGAGCUGCucgCUGCUGC-CCGCGc -3'
miRNA:   3'- -GCC-CGaCUCGAUG---GACGACGuGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 2714 0.66 0.70754
Target:  5'- cCGGGCcccUGgccccGGCcgACUUGCgcuUGCGCCGCGg -3'
miRNA:   3'- -GCCCG---AC-----UCGa-UGGACG---ACGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 2975 0.68 0.536236
Target:  5'- cCGGGCUGAgGCUggggcucgGCCUgGCggcccgGCGCCGgGg -3'
miRNA:   3'- -GCCCGACU-CGA--------UGGA-CGa-----CGUGGCgU- -5'
23585 5' -59.9 NC_005261.1 + 3447 0.66 0.70754
Target:  5'- gCGGGCgc-GCggGCC-GCcGCGCCGCGc -3'
miRNA:   3'- -GCCCGacuCGa-UGGaCGaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 5316 0.7 0.4507
Target:  5'- aGGGCagGAGCcGCC-GCUcgGCGCCGCc -3'
miRNA:   3'- gCCCGa-CUCGaUGGaCGA--CGUGGCGu -5'
23585 5' -59.9 NC_005261.1 + 6437 0.72 0.365167
Target:  5'- aGGGCgguccggGGGCcgGCCggGCUGC-CCGCAc -3'
miRNA:   3'- gCCCGa------CUCGa-UGGa-CGACGuGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 7563 0.66 0.697569
Target:  5'- gCGGGCagGGGCUcGCCgaGgaGCAgCGCGu -3'
miRNA:   3'- -GCCCGa-CUCGA-UGGa-CgaCGUgGCGU- -5'
23585 5' -59.9 NC_005261.1 + 7920 0.68 0.566051
Target:  5'- uGGcGcCUGAGCUccauCCUGCU-CGCCGCc -3'
miRNA:   3'- gCC-C-GACUCGAu---GGACGAcGUGGCGu -5'
23585 5' -59.9 NC_005261.1 + 9002 0.71 0.381358
Target:  5'- uGGGCggGAGCcACUUGagGCGCCGCAc -3'
miRNA:   3'- gCCCGa-CUCGaUGGACgaCGUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 9155 0.69 0.506986
Target:  5'- uCGGGCUGGG--ACCUG--GCGCCGCc -3'
miRNA:   3'- -GCCCGACUCgaUGGACgaCGUGGCGu -5'
23585 5' -59.9 NC_005261.1 + 10946 0.66 0.65723
Target:  5'- gCGGGgaGGGCUGCCcccgcgGCgggcggGCccGCCGUAg -3'
miRNA:   3'- -GCCCgaCUCGAUGGa-----CGa-----CG--UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 11640 0.68 0.56505
Target:  5'- gCGGGCcuguuuuUGGGCUACUgccgcgcGCUGCugCaGCAu -3'
miRNA:   3'- -GCCCG-------ACUCGAUGGa------CGACGugG-CGU- -5'
23585 5' -59.9 NC_005261.1 + 12021 0.73 0.319505
Target:  5'- gGGaGCUgGGGCUGCC-GCUGguCCGCGc -3'
miRNA:   3'- gCC-CGA-CUCGAUGGaCGACguGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 12808 0.69 0.506986
Target:  5'- aGGGaUGGGCgGCCUGa-GCGCCGCc -3'
miRNA:   3'- gCCCgACUCGaUGGACgaCGUGGCGu -5'
23585 5' -59.9 NC_005261.1 + 14163 0.71 0.373203
Target:  5'- cCGGGCUgcagucggccGAGCUguACCUGCUgGCGCuagCGCAc -3'
miRNA:   3'- -GCCCGA----------CUCGA--UGGACGA-CGUG---GCGU- -5'
23585 5' -59.9 NC_005261.1 + 14309 0.7 0.469096
Target:  5'- gCGGGCgc-GC-ACCUGCUcGgGCCGCAc -3'
miRNA:   3'- -GCCCGacuCGaUGGACGA-CgUGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 14599 0.7 0.447975
Target:  5'- gGGGCUGAucgcgcagcgGCUgaugggcagccugaACCUGCUGCugaACUGCGu -3'
miRNA:   3'- gCCCGACU----------CGA--------------UGGACGACG---UGGCGU- -5'
23585 5' -59.9 NC_005261.1 + 14980 0.66 0.70754
Target:  5'- aCGGGCgaUGGGCgggGCCcGCgccuggGCgGCCGCu -3'
miRNA:   3'- -GCCCG--ACUCGa--UGGaCGa-----CG-UGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.