miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 86928 0.65 0.947754
Target:  5'- -gCGCCGGCGUgcgcgagguAGGUGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79667 0.66 0.946862
Target:  5'- gCUCGCCgcucgcggccacgacGGCGCag-GAgcccGGGCGGCg-- -3'
miRNA:   3'- -GAGCGG---------------UCGCGauaUU----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 67523 0.66 0.945047
Target:  5'- gUCGCCgcGGCGCccgc--GGCGGCg-- -3'
miRNA:   3'- gAGCGG--UCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 110167 0.66 0.945047
Target:  5'- -cCGCCAccGCGCcccccGGGCGGCa-- -3'
miRNA:   3'- gaGCGGU--CGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 43617 0.66 0.945047
Target:  5'- -gCGCCGGCgGCggcGAGGGCGcGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauaUUUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 73352 0.66 0.945047
Target:  5'- -cCGcCCGGCGCcggcucAGGCGGCg-- -3'
miRNA:   3'- gaGC-GGUCGCGauauu-UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 16297 0.66 0.945047
Target:  5'- --aGCUGGCGCUGcUGAAgagcguGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAU-AUUU------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 30364 0.66 0.945047
Target:  5'- -gCGCgAGCGCgc---GGGCGGCc-- -3'
miRNA:   3'- gaGCGgUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52587 0.66 0.945047
Target:  5'- -gCGgCGGCGCUucAUGGAccugcucaacGGCGGCUUc -3'
miRNA:   3'- gaGCgGUCGCGA--UAUUU----------CCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 36831 0.66 0.945047
Target:  5'- -aCGCaagCGGCGCUGcUGcuGGCGGCcgUGg -3'
miRNA:   3'- gaGCG---GUCGCGAU-AUuuCCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 16398 0.66 0.943191
Target:  5'- -gCGCCGGUGCgccgccgcGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20188 0.66 0.943191
Target:  5'- -cCGCCAGCGCgggcgucGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 107166 0.66 0.942248
Target:  5'- --gGCCAGCGCcuccgucucGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGauauuu---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 75293 0.66 0.942248
Target:  5'- cCUCGCCGGUGCggggcugccugccgGUGggcuAGGGCGcGCg-- -3'
miRNA:   3'- -GAGCGGUCGCGa-------------UAU----UUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 38117 0.66 0.942248
Target:  5'- --gGCCGGUGCgggcgccgcuGGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGauauu-----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 15843 0.66 0.940333
Target:  5'- aUCGCgAGCGCgcUAGAGgacgaggucGCGGCa-- -3'
miRNA:   3'- gAGCGgUCGCGauAUUUC---------CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70888 0.66 0.940333
Target:  5'- uUCGCgggccCGGCGCUGUuccuGCGGCUg- -3'
miRNA:   3'- gAGCG-----GUCGCGAUAuuucCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 102554 0.66 0.940333
Target:  5'- gCUCGCCGGCGggGgugcGGcCGGCa-- -3'
miRNA:   3'- -GAGCGGUCGCgaUauuuCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 54744 0.66 0.940333
Target:  5'- -gCGCCuGGCGCUcuac-GGCGGCg-- -3'
miRNA:   3'- gaGCGG-UCGCGAuauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 122434 0.66 0.940333
Target:  5'- -gUGgCGGCGCUGgccgcgcGGGCGGCg-- -3'
miRNA:   3'- gaGCgGUCGCGAUauu----UCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.