miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 86928 0.65 0.947754
Target:  5'- -gCGCCGGCGUgcgcgagguAGGUGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 102554 0.66 0.940333
Target:  5'- gCUCGCCGGCGggGgugcGGcCGGCa-- -3'
miRNA:   3'- -GAGCGGUCGCgaUauuuCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 81371 0.66 0.924665
Target:  5'- -gCGCCAGCGCgauca--GCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGauauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70577 0.66 0.930143
Target:  5'- -gCGCCGcGCGCgg-AcGGGCGGCc-- -3'
miRNA:   3'- gaGCGGU-CGCGauaUuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 100317 0.66 0.930143
Target:  5'- aCUCGCgCAGCGCgu----GGCGcGCg-- -3'
miRNA:   3'- -GAGCG-GUCGCGauauuuCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 102731 0.66 0.930143
Target:  5'- -cUGCCAGCGggGcAAGGGCGGgUg- -3'
miRNA:   3'- gaGCGGUCGCgaUaUUUCCGCCgAac -5'
23586 3' -53.8 NC_005261.1 + 5257 0.66 0.930143
Target:  5'- gUCGCgGuGCGCggcgacGAAGGCGGCc-- -3'
miRNA:   3'- gAGCGgU-CGCGaua---UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 35739 0.66 0.935365
Target:  5'- --gGCCcaGGCGCUGgcgcGGCGGCg-- -3'
miRNA:   3'- gagCGG--UCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 128129 0.66 0.937383
Target:  5'- gUCGCCgccgcugccggGGCGCggcgggggucGGGCGGCUg- -3'
miRNA:   3'- gAGCGG-----------UCGCGauauu-----UCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 134899 0.66 0.935365
Target:  5'- -gCGCCgcGGCGCggGUGGAGGUGGa--- -3'
miRNA:   3'- gaGCGG--UCGCGa-UAUUUCCGCCgaac -5'
23586 3' -53.8 NC_005261.1 + 87057 0.66 0.924665
Target:  5'- gUCGCCAGCGCguucaUAUGAugcgccgccgcaGGGCcccgggGGCUUu -3'
miRNA:   3'- gAGCGGUCGCG-----AUAUU------------UCCG------CCGAAc -5'
23586 3' -53.8 NC_005261.1 + 26570 0.66 0.923539
Target:  5'- -cCGCCaccgcGGCGCgggagggcugGGAGGCGGCg-- -3'
miRNA:   3'- gaGCGG-----UCGCGaua-------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 54744 0.66 0.940333
Target:  5'- -gCGCCuGGCGCUcuac-GGCGGCg-- -3'
miRNA:   3'- gaGCGG-UCGCGAuauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 122434 0.66 0.940333
Target:  5'- -gUGgCGGCGCUGgccgcgcGGGCGGCg-- -3'
miRNA:   3'- gaGCgGUCGCGAUauu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70888 0.66 0.940333
Target:  5'- uUCGCgggccCGGCGCUGUuccuGCGGCUg- -3'
miRNA:   3'- gAGCG-----GUCGCGAUAuuucCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 108025 0.66 0.932263
Target:  5'- -cCGCCAGCGCggccgccuccAGcGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauu-----UC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38117 0.66 0.942248
Target:  5'- --gGCCGGUGCgggcgccgcuGGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGauauu-----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 36790 0.66 0.926336
Target:  5'- --gGCCAGCGCUGgaccgcgccgccucGGCGGCc-- -3'
miRNA:   3'- gagCGGUCGCGAUauuu----------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 96034 0.66 0.935365
Target:  5'- -cCGCgCGGCGCcGUGGA-GCGGCUc- -3'
miRNA:   3'- gaGCG-GUCGCGaUAUUUcCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 136801 0.66 0.924665
Target:  5'- -cCGCUGGUGCUG--GAGGCgGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUauUUCCG-CCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.