Results 61 - 80 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 63769 | 0.67 | 0.906701 |
Target: 5'- -aCGCC-GCGCc--GGGGGCGGCg-- -3' miRNA: 3'- gaGCGGuCGCGauaUUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 75671 | 0.67 | 0.912943 |
Target: 5'- -gCGCCggGGCGC-AUGcuGGCGGCg-- -3' miRNA: 3'- gaGCGG--UCGCGaUAUuuCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 78538 | 0.67 | 0.912943 |
Target: 5'- -cUGCCcggAGCGCgugcuggccGAGGGCGGCUUc -3' miRNA: 3'- gaGCGG---UCGCGaua------UUUCCGCCGAAc -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 38387 | 0.67 | 0.906701 |
Target: 5'- --gGCCGGUGCcgcu-GGGCGGCg-- -3' miRNA: 3'- gagCGGUCGCGauauuUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 43202 | 0.67 | 0.917754 |
Target: 5'- -gCGCCgAGCGCcgccggcGGCGGCUUu -3' miRNA: 3'- gaGCGG-UCGCGauauuu-CCGCCGAAc -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 112917 | 0.67 | 0.918932 |
Target: 5'- -cUGCguGCGCgagggcGAGGGCGGCg-- -3' miRNA: 3'- gaGCGguCGCGaua---UUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 85526 | 0.67 | 0.918932 |
Target: 5'- gUCGCCGuccaugucGCGCgc---GGGCGGCUc- -3' miRNA: 3'- gAGCGGU--------CGCGauauuUCCGCCGAac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 123903 | 0.67 | 0.918932 |
Target: 5'- --gGCCGcCGCUGUGGGGuGCGGCc-- -3' miRNA: 3'- gagCGGUcGCGAUAUUUC-CGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 101220 | 0.67 | 0.918932 |
Target: 5'- -cCGCCgcAGCGCguc-GAGGUGGCg-- -3' miRNA: 3'- gaGCGG--UCGCGauauUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 63129 | 0.67 | 0.918932 |
Target: 5'- gCUCcCCGGUGCcg-GGGGGCuGCUUGa -3' miRNA: 3'- -GAGcGGUCGCGauaUUUCCGcCGAAC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 119787 | 0.67 | 0.912943 |
Target: 5'- gUCGCguaccgCAGCGCggagcuGGGCGGCa-- -3' miRNA: 3'- gAGCG------GUCGCGauauu-UCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 64500 | 0.67 | 0.912943 |
Target: 5'- -gCGCgGGUGCUcgGGgcccgcGGGCGGCUc- -3' miRNA: 3'- gaGCGgUCGCGAuaUU------UCCGCCGAac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 128637 | 0.67 | 0.912943 |
Target: 5'- --aGCCGGCugGUUAaucuaaacaUGAGGGCGGCUg- -3' miRNA: 3'- gagCGGUCG--CGAU---------AUUUCCGCCGAac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 39992 | 0.67 | 0.906701 |
Target: 5'- -cCGCCGGCGUgcGUGAAGGCGuacgaGCa-- -3' miRNA: 3'- gaGCGGUCGCGa-UAUUUCCGC-----CGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 38304 | 0.67 | 0.906701 |
Target: 5'- -cCGCCugAGCGCgc--AGGGCGGCc-- -3' miRNA: 3'- gaGCGG--UCGCGauauUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 88028 | 0.67 | 0.906701 |
Target: 5'- --gGCCGGCGgUGccUGGGGGCGGUc-- -3' miRNA: 3'- gagCGGUCGCgAU--AUUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 103844 | 0.67 | 0.902835 |
Target: 5'- gCUCGCCcuuGCGCgcgagccgcGGCGGCg-- -3' miRNA: 3'- -GAGCGGu--CGCGauauuu---CCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 52971 | 0.67 | 0.900868 |
Target: 5'- -gCGCCGGUGCggcgccggcaggcGGGGGCGGCg-- -3' miRNA: 3'- gaGCGGUCGCGaua----------UUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 35835 | 0.67 | 0.900207 |
Target: 5'- --aGCuCGGCGCagaAAAGGCGGCg-- -3' miRNA: 3'- gagCG-GUCGCGauaUUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 108598 | 0.67 | 0.893465 |
Target: 5'- cCUCGCCcacgggcaccAGCGCcuc--GGGCGGCa-- -3' miRNA: 3'- -GAGCGG----------UCGCGauauuUCCGCCGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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