Results 81 - 100 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 52971 | 0.67 | 0.900868 |
Target: 5'- -gCGCCGGUGCggcgccggcaggcGGGGGCGGCg-- -3' miRNA: 3'- gaGCGGUCGCGaua----------UUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 55403 | 0.68 | 0.871789 |
Target: 5'- gCUUGCC-GCGCgg-GAGGcGCGGCa-- -3' miRNA: 3'- -GAGCGGuCGCGauaUUUC-CGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 60099 | 0.68 | 0.879251 |
Target: 5'- -gCGCCGGgGCggcGGGGGUGGCg-- -3' miRNA: 3'- gaGCGGUCgCGauaUUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 20852 | 0.68 | 0.879251 |
Target: 5'- -cCGCCgaagcAGCGCgccuccagGAGGGCGGcCUUGc -3' miRNA: 3'- gaGCGG-----UCGCGaua-----UUUCCGCC-GAAC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 134693 | 0.68 | 0.879251 |
Target: 5'- -cCGCC-GCGCUGcgcgccGAGGCGGCc-- -3' miRNA: 3'- gaGCGGuCGCGAUau----UUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 39915 | 0.68 | 0.871789 |
Target: 5'- -gCGCC-GCGCUGgc--GGCGGCg-- -3' miRNA: 3'- gaGCGGuCGCGAUauuuCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 75547 | 0.68 | 0.883616 |
Target: 5'- -gCGCCGGCGCgugcagcuGGCGGacgUGg -3' miRNA: 3'- gaGCGGUCGCGauauuu--CCGCCga-AC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 88187 | 0.68 | 0.889302 |
Target: 5'- uCUCGCggCGGCGCUGcaccgucgcgcGGCGGCUg- -3' miRNA: 3'- -GAGCG--GUCGCGAUauuu-------CCGCCGAac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 4626 | 0.68 | 0.889302 |
Target: 5'- -gCGCCAGCGCgagGUGGgccgugagcagcgccAGcGCGGCa-- -3' miRNA: 3'- gaGCGGUCGCGa--UAUU---------------UC-CGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 40017 | 0.68 | 0.871789 |
Target: 5'- -cCGCC-GCGCUGccguGGCGGCg-- -3' miRNA: 3'- gaGCGGuCGCGAUauuuCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 106958 | 0.68 | 0.871789 |
Target: 5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3' miRNA: 3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 64468 | 0.68 | 0.871789 |
Target: 5'- --gGCCAGCGCcucGUAGAaGCGGCcgUGg -3' miRNA: 3'- gagCGGUCGCGa--UAUUUcCGCCGa-AC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 20484 | 0.68 | 0.871789 |
Target: 5'- --aGUCGGCGUUG--GGGGCGGCg-- -3' miRNA: 3'- gagCGGUCGCGAUauUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 69571 | 0.68 | 0.871789 |
Target: 5'- -aCGCCGGCgGCgc---GGGCGGCggUGa -3' miRNA: 3'- gaGCGGUCG-CGauauuUCCGCCGa-AC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 83184 | 0.68 | 0.855376 |
Target: 5'- gCUCGCCGgccccgcgcagcuGCGCgggGccGGCGGCUa- -3' miRNA: 3'- -GAGCGGU-------------CGCGauaUuuCCGCCGAac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 72220 | 0.68 | 0.855376 |
Target: 5'- -gCGCCGGCGgUggcgcgcGUAAAGGCGGaCcUGg -3' miRNA: 3'- gaGCGGUCGCgA-------UAUUUCCGCC-GaAC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 57945 | 0.68 | 0.848047 |
Target: 5'- -aCGCCAcgcacGUGCUGUc-GGGCGGCcUGg -3' miRNA: 3'- gaGCGGU-----CGCGAUAuuUCCGCCGaAC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 95055 | 0.68 | 0.845566 |
Target: 5'- cCUCGCCGGCGgcgccguaucgcgcCgcgAUGucGGCGGCg-- -3' miRNA: 3'- -GAGCGGUCGC--------------Ga--UAUuuCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 87361 | 0.68 | 0.85618 |
Target: 5'- -gCGCCAGCGCggcGAAGGCgccgaccugGGCg-- -3' miRNA: 3'- gaGCGGUCGCGauaUUUCCG---------CCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 77447 | 0.68 | 0.864096 |
Target: 5'- uCUCGgCGGUGCUGcgcgcGGCGGCg-- -3' miRNA: 3'- -GAGCgGUCGCGAUauuu-CCGCCGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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