miRNA display CGI


Results 101 - 120 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 99510 0.68 0.886478
Target:  5'- gCUCuGCgGGCGCUG--GGGGCgcgggccuggccGGCUUGg -3'
miRNA:   3'- -GAG-CGgUCGCGAUauUUCCG------------CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 88187 0.68 0.889302
Target:  5'- uCUCGCggCGGCGCUGcaccgucgcgcGGCGGCUg- -3'
miRNA:   3'- -GAGCG--GUCGCGAUauuu-------CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 4626 0.68 0.889302
Target:  5'- -gCGCCAGCGCgagGUGGgccgugagcagcgccAGcGCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGa--UAUU---------------UC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 98863 0.68 0.886478
Target:  5'- cCUCcCCGGcCGCcgauGAGGCGGCUg- -3'
miRNA:   3'- -GAGcGGUC-GCGauauUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 126042 0.68 0.886478
Target:  5'- -gCGgCGGCGCUgcAUGGuGGCGGCg-- -3'
miRNA:   3'- gaGCgGUCGCGA--UAUUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 87547 0.68 0.886478
Target:  5'- gUCGCUGGCGCggauguUAUAcGGcGCGGaCUUGg -3'
miRNA:   3'- gAGCGGUCGCG------AUAUuUC-CGCC-GAAC- -5'
23586 3' -53.8 NC_005261.1 + 55403 0.68 0.871789
Target:  5'- gCUUGCC-GCGCgg-GAGGcGCGGCa-- -3'
miRNA:   3'- -GAGCGGuCGCGauaUUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 39915 0.68 0.871789
Target:  5'- -gCGCC-GCGCUGgc--GGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 51197 0.68 0.871789
Target:  5'- gCUCGCCAcgcccccgggcGCGCUGcugcuGGGCGcGCUa- -3'
miRNA:   3'- -GAGCGGU-----------CGCGAUauu--UCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 68696 0.68 0.864096
Target:  5'- --gGCCGGCGCggacGAcGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGaua-UUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 127888 0.68 0.85618
Target:  5'- -gCGCCGGCGCccgucGGGCccgggccugGGCUUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCG---------CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 95055 0.68 0.845566
Target:  5'- cCUCGCCGGCGgcgccguaucgcgcCgcgAUGucGGCGGCg-- -3'
miRNA:   3'- -GAGCGGUCGC--------------Ga--UAUuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 57945 0.68 0.848047
Target:  5'- -aCGCCAcgcacGUGCUGUc-GGGCGGCcUGg -3'
miRNA:   3'- gaGCGGU-----CGCGAUAuuUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 72220 0.68 0.855376
Target:  5'- -gCGCCGGCGgUggcgcgcGUAAAGGCGGaCcUGg -3'
miRNA:   3'- gaGCGGUCGCgA-------UAUUUCCGCC-GaAC- -5'
23586 3' -53.8 NC_005261.1 + 83184 0.68 0.855376
Target:  5'- gCUCGCCGgccccgcgcagcuGCGCgggGccGGCGGCUa- -3'
miRNA:   3'- -GAGCGGU-------------CGCGauaUuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 87361 0.68 0.85618
Target:  5'- -gCGCCAGCGCggcGAAGGCgccgaccugGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCG---------CCGaac -5'
23586 3' -53.8 NC_005261.1 + 77447 0.68 0.864096
Target:  5'- uCUCGgCGGUGCUGcgcgcGGCGGCg-- -3'
miRNA:   3'- -GAGCgGUCGCGAUauuu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20484 0.68 0.871789
Target:  5'- --aGUCGGCGUUG--GGGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 64468 0.68 0.871789
Target:  5'- --gGCCAGCGCcucGUAGAaGCGGCcgUGg -3'
miRNA:   3'- gagCGGUCGCGa--UAUUUcCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 82824 0.68 0.886478
Target:  5'- --aGCCGGCGCgccGUAGAugcagucucagcGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGa--UAUUU------------CCGCCGaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.