miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 2262 0.72 0.659767
Target:  5'- -cCGCCGGCGCUcguccucgccGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAuauu------UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 18866 0.72 0.674518
Target:  5'- uUCgGCCGGgGUUGggGAGGGCgGGCUUGg -3'
miRNA:   3'- gAG-CGGUCgCGAUa-UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 79888 0.72 0.685011
Target:  5'- aCUgGCCGGCGCggcuccgcGAGGCGGUg-- -3'
miRNA:   3'- -GAgCGGUCGCGauau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 105136 0.72 0.65343
Target:  5'- -cCGCCGGCGCgcgcagGUccucgcggcucGAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa-----UA-----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 138123 0.72 0.674518
Target:  5'- -gCGCCGGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 109109 0.72 0.642854
Target:  5'- -aCGCCGGC-C-AUGAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGcGaUAUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 440 0.72 0.674518
Target:  5'- -gCGCCGGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 37848 0.72 0.674518
Target:  5'- -aCGgCGGCGUgGUGGAGGCGGCc-- -3'
miRNA:   3'- gaGCgGUCGCGaUAUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 112957 0.71 0.726416
Target:  5'- uUCGCC-GCGCUGUccacGGCGGCc-- -3'
miRNA:   3'- gAGCGGuCGCGAUAuuu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 23793 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 29957 0.71 0.705847
Target:  5'- -cCGCgaGGCGCUA--GAGGCGGCg-- -3'
miRNA:   3'- gaGCGg-UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 35971 0.71 0.705847
Target:  5'- -cCGCuCGGcCGCUGUAgcGGCGGCg-- -3'
miRNA:   3'- gaGCG-GUC-GCGAUAUuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 22327 0.71 0.712049
Target:  5'- --gGCCGGCGCUGacgacggcggggaGGAGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUa------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 103501 0.71 0.736575
Target:  5'- gUCGUCGGCGCcgcgGAcGGCGGCg-- -3'
miRNA:   3'- gAGCGGUCGCGaua-UUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 4244 0.71 0.695457
Target:  5'- -cCGCCGGgGCUGaGGAGGuCGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGAUaUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134475 0.71 0.705847
Target:  5'- -cCGCgaGGCGCUA--GAGGCGGCg-- -3'
miRNA:   3'- gaGCGg-UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79290 0.71 0.736575
Target:  5'- gCUgGCCgAGCGCUucc-GGGCGGCg-- -3'
miRNA:   3'- -GAgCGG-UCGCGAuauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 43168 0.71 0.736575
Target:  5'- gCUCGCgGGCGUgcauggcgGAGGGCGGUcUGc -3'
miRNA:   3'- -GAGCGgUCGCGaua-----UUUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 3925 0.71 0.736575
Target:  5'- -gCuCCAGCGCggcGAAGGCGGCgacgUGg -3'
miRNA:   3'- gaGcGGUCGCGauaUUUCCGCCGa---AC- -5'
23586 3' -53.8 NC_005261.1 + 8480 0.71 0.71617
Target:  5'- gUCGCCGGUGCU--GAAGGCcgGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGAuaUUUCCG--CCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.