miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 128367 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 3925 0.71 0.736575
Target:  5'- -gCuCCAGCGCggcGAAGGCGGCgacgUGg -3'
miRNA:   3'- gaGcGGUCGCGauaUUUCCGCCGa---AC- -5'
23586 3' -53.8 NC_005261.1 + 43168 0.71 0.736575
Target:  5'- gCUCGCgGGCGUgcauggcgGAGGGCGGUcUGc -3'
miRNA:   3'- -GAGCGgUCGCGaua-----UUUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 79290 0.71 0.736575
Target:  5'- gCUgGCCgAGCGCUucc-GGGCGGCg-- -3'
miRNA:   3'- -GAgCGG-UCGCGAuauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 128310 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 61370 0.71 0.695457
Target:  5'- cCUCGCCgGGCGCc----AGGCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 69508 0.71 0.695457
Target:  5'- -cCGCCGGCGCccgccgcGUGAGGGcCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa------UAUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 58790 0.71 0.746637
Target:  5'- --gGCCAGCGCgcgcagGAAGGcCGGCa-- -3'
miRNA:   3'- gagCGGUCGCGaua---UUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 4244 0.71 0.695457
Target:  5'- -cCGCCGGgGCUGaGGAGGuCGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGAUaUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134361 0.71 0.736575
Target:  5'- -cCGCC-GCGCg--GGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134475 0.71 0.705847
Target:  5'- -cCGCgaGGCGCUA--GAGGCGGCg-- -3'
miRNA:   3'- gaGCGg-UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70833 0.7 0.798859
Target:  5'- -gCGCCGGCGCgcgcGUAcgccuccucagguccAGGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGa---UAU---------------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 116474 0.7 0.795133
Target:  5'- uUUGCCGGCGCgggcGGGGCgGGCg-- -3'
miRNA:   3'- gAGCGGUCGCGauauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 68821 0.7 0.795133
Target:  5'- -gCGCCGGCGCgUGUGucggGAGGCcaGGCUc- -3'
miRNA:   3'- gaGCGGUCGCG-AUAU----UUCCG--CCGAac -5'
23586 3' -53.8 NC_005261.1 + 36618 0.7 0.785709
Target:  5'- -gCGCgagaGGCGCUA--GAGGCGGCa-- -3'
miRNA:   3'- gaGCGg---UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52839 0.7 0.786659
Target:  5'- gCUCGCgGGCGCcuaccagaagcccGAGGGCGGCg-- -3'
miRNA:   3'- -GAGCGgUCGCGaua----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 33862 0.7 0.795133
Target:  5'- cCUCcgGCCGGCgGCUGUucucgcGGGCGGCg-- -3'
miRNA:   3'- -GAG--CGGUCG-CGAUAuu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 59417 0.7 0.776138
Target:  5'- -gCGCCGGCGCUGUcgc-GCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGAUAuuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 93899 0.7 0.766429
Target:  5'- gUCGCCAGCGaCUGc-GGGcGCGGCg-- -3'
miRNA:   3'- gAGCGGUCGC-GAUauUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 58465 0.7 0.766429
Target:  5'- aCUCGCCgGGCGCgUAUGAgccgcAGGcCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCG-AUAUU-----UCC-GCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.