miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 52839 0.7 0.786659
Target:  5'- gCUCGCgGGCGCcuaccagaagcccGAGGGCGGCg-- -3'
miRNA:   3'- -GAGCGgUCGCGaua----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 59417 0.7 0.776138
Target:  5'- -gCGCCGGCGCUGUcgc-GCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGAUAuuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 116474 0.7 0.795133
Target:  5'- uUUGCCGGCGCgggcGGGGCgGGCg-- -3'
miRNA:   3'- gAGCGGUCGCGauauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 58465 0.7 0.766429
Target:  5'- aCUCGCCgGGCGCgUAUGAgccgcAGGcCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCG-AUAUU-----UCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 23737 0.69 0.822422
Target:  5'- -gCGCCgaGGCGCguccgggAGGGGCgGGCUUGc -3'
miRNA:   3'- gaGCGG--UCGCGaua----UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 38551 0.69 0.814399
Target:  5'- -gCGCCGGCGCgcggccaugcGGCGGgUUGa -3'
miRNA:   3'- gaGCGGUCGCGauauuu----CCGCCgAAC- -5'
23586 3' -53.8 NC_005261.1 + 19935 0.69 0.822422
Target:  5'- cCUCGCUAGCGUccUGggcggggguGGGGCGGCc-- -3'
miRNA:   3'- -GAGCGGUCGCG--AUau-------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 63029 0.69 0.804399
Target:  5'- -gCGCCGGCGCccgcggcGAGGCGGUc-- -3'
miRNA:   3'- gaGCGGUCGCGauau---UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 72581 0.69 0.834601
Target:  5'- -gCGCCGGCGCgcgccagaggcgAGAGGCGGagUGg -3'
miRNA:   3'- gaGCGGUCGCGaua---------UUUCCGCCgaAC- -5'
23586 3' -53.8 NC_005261.1 + 90221 0.69 0.83116
Target:  5'- gCUCuGCCGGCGggGcGAcGGCGGCUg- -3'
miRNA:   3'- -GAG-CGGUCGCgaUaUUuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 17102 0.69 0.813499
Target:  5'- -gUGCCAGCGCUcgauguaguuGUAucgcGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGA----------UAUuu--CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 62115 0.69 0.827687
Target:  5'- -gCGCCGGCGCggcgcgguGGCGGUUc- -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 128254 0.69 0.822422
Target:  5'- -gCGCCgaGGCGCguccgggAGGGGCgGGCUUGc -3'
miRNA:   3'- gaGCGG--UCGCGaua----UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 74780 0.69 0.822422
Target:  5'- cCUCGCgGGCGCUcgGcGGGcGCGGCc-- -3'
miRNA:   3'- -GAGCGgUCGCGAuaU-UUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 71555 0.69 0.81709
Target:  5'- aUCGCCgccgaGGCGCUGgggcugcucgcggaGGAGGCGGCc-- -3'
miRNA:   3'- gAGCGG-----UCGCGAUa-------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 44396 0.69 0.813499
Target:  5'- gCUCGgCGGCGCcgccc-GGCGGCUg- -3'
miRNA:   3'- -GAGCgGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 20930 0.69 0.813499
Target:  5'- -gCGCCGGgGCUGggcucGAGGGCGGgCUc- -3'
miRNA:   3'- gaGCGGUCgCGAUa----UUUCCGCC-GAac -5'
23586 3' -53.8 NC_005261.1 + 62240 0.69 0.804399
Target:  5'- -gCGuCCAGCGC---GAGGGCGGCc-- -3'
miRNA:   3'- gaGC-GGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79458 0.69 0.839704
Target:  5'- gCUgGCCGGCGCgcUGGGGGC-GCUc- -3'
miRNA:   3'- -GAgCGGUCGCGauAUUUCCGcCGAac -5'
23586 3' -53.8 NC_005261.1 + 134847 0.69 0.83116
Target:  5'- -gUGCCGGCGCggcu--GGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.