miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 20930 0.69 0.813499
Target:  5'- -gCGCCGGgGCUGggcucGAGGGCGGgCUc- -3'
miRNA:   3'- gaGCGGUCgCGAUa----UUUCCGCC-GAac -5'
23586 3' -53.8 NC_005261.1 + 35753 0.69 0.804399
Target:  5'- --aGCCAGcCGC---GAAGGCGGCUc- -3'
miRNA:   3'- gagCGGUC-GCGauaUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 79458 0.69 0.839704
Target:  5'- gCUgGCCGGCGCgcUGGGGGC-GCUc- -3'
miRNA:   3'- -GAgCGGUCGCGauAUUUCCGcCGAac -5'
23586 3' -53.8 NC_005261.1 + 72581 0.69 0.834601
Target:  5'- -gCGCCGGCGCgcgccagaggcgAGAGGCGGagUGg -3'
miRNA:   3'- gaGCGGUCGCGaua---------UUUCCGCCgaAC- -5'
23586 3' -53.8 NC_005261.1 + 134847 0.69 0.83116
Target:  5'- -gUGCCGGCGCggcu--GGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 62115 0.69 0.827687
Target:  5'- -gCGCCGGCGCggcgcgguGGCGGUUc- -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 44396 0.69 0.813499
Target:  5'- gCUCGgCGGCGCcgccc-GGCGGCUg- -3'
miRNA:   3'- -GAGCgGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 17102 0.69 0.813499
Target:  5'- -gUGCCAGCGCUcgauguaguuGUAucgcGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGA----------UAUuu--CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 128254 0.69 0.822422
Target:  5'- -gCGCCgaGGCGCguccgggAGGGGCgGGCUUGc -3'
miRNA:   3'- gaGCGG--UCGCGaua----UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 74780 0.69 0.822422
Target:  5'- cCUCGCgGGCGCUcgGcGGGcGCGGCc-- -3'
miRNA:   3'- -GAGCGgUCGCGAuaU-UUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 106958 0.68 0.871789
Target:  5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3'
miRNA:   3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 40017 0.68 0.871789
Target:  5'- -cCGCC-GCGCUGccguGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20852 0.68 0.879251
Target:  5'- -cCGCCgaagcAGCGCgccuccagGAGGGCGGcCUUGc -3'
miRNA:   3'- gaGCGG-----UCGCGaua-----UUUCCGCC-GAAC- -5'
23586 3' -53.8 NC_005261.1 + 134693 0.68 0.879251
Target:  5'- -cCGCC-GCGCUGcgcgccGAGGCGGCc-- -3'
miRNA:   3'- gaGCGGuCGCGAUau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 60099 0.68 0.879251
Target:  5'- -gCGCCGGgGCggcGGGGGUGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 75547 0.68 0.883616
Target:  5'- -gCGCCGGCGCgugcagcuGGCGGacgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCga-AC- -5'
23586 3' -53.8 NC_005261.1 + 55403 0.68 0.871789
Target:  5'- gCUUGCC-GCGCgg-GAGGcGCGGCa-- -3'
miRNA:   3'- -GAGCGGuCGCGauaUUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 39915 0.68 0.871789
Target:  5'- -gCGCC-GCGCUGgc--GGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 64468 0.68 0.871789
Target:  5'- --gGCCAGCGCcucGUAGAaGCGGCcgUGg -3'
miRNA:   3'- gagCGGUCGCGa--UAUUUcCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 20484 0.68 0.871789
Target:  5'- --aGUCGGCGUUG--GGGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUauUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.