miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 2441 0.68 0.871789
Target:  5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3'
miRNA:   3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 51197 0.68 0.871789
Target:  5'- gCUCGCCAcgcccccgggcGCGCUGcugcuGGGCGcGCUa- -3'
miRNA:   3'- -GAGCGGU-----------CGCGAUauu--UCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 94385 0.68 0.871789
Target:  5'- aUgGCCAGCGCggc---GGCGGCc-- -3'
miRNA:   3'- gAgCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 88812 0.68 0.886478
Target:  5'- -aCGCCGGCgGCg----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 121423 0.68 0.886478
Target:  5'- -cCGCCGcCGCUAc-GGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUcGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 75547 0.68 0.883616
Target:  5'- -gCGCCGGCGCgugcagcuGGCGGacgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCga-AC- -5'
23586 3' -53.8 NC_005261.1 + 134693 0.68 0.879251
Target:  5'- -cCGCC-GCGCUGcgcgccGAGGCGGCc-- -3'
miRNA:   3'- gaGCGGuCGCGAUau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 60099 0.68 0.879251
Target:  5'- -gCGCCGGgGCggcGGGGGUGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 40017 0.68 0.871789
Target:  5'- -cCGCC-GCGCUGccguGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 106958 0.68 0.871789
Target:  5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3'
miRNA:   3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 69571 0.68 0.871789
Target:  5'- -aCGCCGGCgGCgc---GGGCGGCggUGa -3'
miRNA:   3'- gaGCGGUCG-CGauauuUCCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 55403 0.68 0.871789
Target:  5'- gCUUGCC-GCGCgg-GAGGcGCGGCa-- -3'
miRNA:   3'- -GAGCGGuCGCGauaUUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 39915 0.68 0.871789
Target:  5'- -gCGCC-GCGCUGgc--GGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 64468 0.68 0.871789
Target:  5'- --gGCCAGCGCcucGUAGAaGCGGCcgUGg -3'
miRNA:   3'- gagCGGUCGCGa--UAUUUcCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 20484 0.68 0.871789
Target:  5'- --aGUCGGCGUUG--GGGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 87361 0.68 0.85618
Target:  5'- -gCGCCAGCGCggcGAAGGCgccgaccugGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCG---------CCGaac -5'
23586 3' -53.8 NC_005261.1 + 41635 0.68 0.871789
Target:  5'- cCUCGgCGaccuugagguGCGC-GUGGAGGCGGCUc- -3'
miRNA:   3'- -GAGCgGU----------CGCGaUAUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 72220 0.68 0.855376
Target:  5'- -gCGCCGGCGgUggcgcgcGUAAAGGCGGaCcUGg -3'
miRNA:   3'- gaGCGGUCGCgA-------UAUUUCCGCC-GaAC- -5'
23586 3' -53.8 NC_005261.1 + 57945 0.68 0.848047
Target:  5'- -aCGCCAcgcacGUGCUGUc-GGGCGGCcUGg -3'
miRNA:   3'- gaGCGGU-----CGCGAUAuuUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 77447 0.68 0.864096
Target:  5'- uCUCGgCGGUGCUGcgcgcGGCGGCg-- -3'
miRNA:   3'- -GAGCgGUCGCGAUauuu-CCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.