miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 109617 1.08 0.004337
Target:  5'- gCUCGCCAGCGCUAUAAAGGCGGCUUGc -3'
miRNA:   3'- -GAGCGGUCGCGAUAUUUCCGCCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 100471 0.78 0.344223
Target:  5'- -gCGCCGGCGCUu---GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAuauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 99004 0.78 0.367869
Target:  5'- cCUCGCCGGCGCgcgcgagggccauGGCGGCUa- -3'
miRNA:   3'- -GAGCGGUCGCGauauuu-------CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 5771 0.77 0.394351
Target:  5'- -cUGCCGGCGCg--GAGGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38261 0.75 0.487607
Target:  5'- -aCGCCAGC-CUGggcUGGGGGCGGCUg- -3'
miRNA:   3'- gaGCGGUCGcGAU---AUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 31115 0.75 0.497513
Target:  5'- gUCGCCGGCGCggu--GGcGCGGCUg- -3'
miRNA:   3'- gAGCGGUCGCGauauuUC-CGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 53020 0.75 0.517587
Target:  5'- gCUCGCCAGCGCUucc---GCGGCg-- -3'
miRNA:   3'- -GAGCGGUCGCGAuauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 31335 0.74 0.564878
Target:  5'- -cCGCCAGCGCgccgcugcGGCGGCgcgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGa--AC- -5'
23586 3' -53.8 NC_005261.1 + 135852 0.74 0.564878
Target:  5'- -cCGCCAGCGCgccgcugcGGCGGCgcgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGa--AC- -5'
23586 3' -53.8 NC_005261.1 + 5618 0.74 0.569049
Target:  5'- -gCGCCAGCGCccccu-GGCGGCUc- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 99694 0.73 0.590013
Target:  5'- -gCGCCGGCGCUGUGcccGGCGcGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUAUuu-CCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 91702 0.73 0.590013
Target:  5'- -cUGCCAGCGCgcagcGGAGGCGGUg-- -3'
miRNA:   3'- gaGCGGUCGCGaua--UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 16597 0.73 0.59317
Target:  5'- gCUCGCCGGCgGCggccgccgagcggcgGGAGGCGGCg-- -3'
miRNA:   3'- -GAGCGGUCG-CGaua------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 103613 0.73 0.600548
Target:  5'- -gCGgCAGCGCg--GGAGGCGGCg-- -3'
miRNA:   3'- gaGCgGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 66024 0.73 0.632269
Target:  5'- -cCGCCGGCGCgucGUAGucGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGa--UAUUu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 19548 0.73 0.632269
Target:  5'- -cCGCCAGCGCcGUGGggagcgccagcGGGCGGUUg- -3'
miRNA:   3'- gaGCGGUCGCGaUAUU-----------UCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 109109 0.72 0.642854
Target:  5'- -aCGCCGGC-C-AUGAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGcGaUAUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 65155 0.72 0.65343
Target:  5'- -gCGCCAGCGCgcaGAAGGUGcGCUc- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 105136 0.72 0.65343
Target:  5'- -cCGCCGGCGCgcgcagGUccucgcggcucGAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa-----UA-----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 2262 0.72 0.659767
Target:  5'- -cCGCCGGCGCUcguccucgccGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAuauu------UCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.