miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 70817 0.7 0.795133
Target:  5'- -cCGCgGGCGCUGcu--GGCGGCg-- -3'
miRNA:   3'- gaGCGgUCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 116474 0.7 0.795133
Target:  5'- uUUGCCGGCGCgggcGGGGCgGGCg-- -3'
miRNA:   3'- gAGCGGUCGCGauauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 33862 0.7 0.795133
Target:  5'- cCUCcgGCCGGCgGCUGUucucgcGGGCGGCg-- -3'
miRNA:   3'- -GAG--CGGUCG-CGAUAuu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70833 0.7 0.798859
Target:  5'- -gCGCCGGCGCgcgcGUAcgccuccucagguccAGGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGa---UAU---------------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 35753 0.69 0.804399
Target:  5'- --aGCCAGcCGC---GAAGGCGGCUc- -3'
miRNA:   3'- gagCGGUC-GCGauaUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 63029 0.69 0.804399
Target:  5'- -gCGCCGGCGCccgcggcGAGGCGGUc-- -3'
miRNA:   3'- gaGCGGUCGCGauau---UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 61219 0.69 0.804399
Target:  5'- -gCGUCGGCGag--GAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCgauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 62240 0.69 0.804399
Target:  5'- -gCGuCCAGCGC---GAGGGCGGCc-- -3'
miRNA:   3'- gaGC-GGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 5691 0.69 0.804399
Target:  5'- cCUCGCCcucGCGCgc-GAGGGCGcGCUc- -3'
miRNA:   3'- -GAGCGGu--CGCGauaUUUCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 65507 0.69 0.804399
Target:  5'- -cCGCCcGCGCggacGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20930 0.69 0.813499
Target:  5'- -gCGCCGGgGCUGggcucGAGGGCGGgCUc- -3'
miRNA:   3'- gaGCGGUCgCGAUa----UUUCCGCC-GAac -5'
23586 3' -53.8 NC_005261.1 + 44396 0.69 0.813499
Target:  5'- gCUCGgCGGCGCcgccc-GGCGGCUg- -3'
miRNA:   3'- -GAGCgGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 17102 0.69 0.813499
Target:  5'- -gUGCCAGCGCUcgauguaguuGUAucgcGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGA----------UAUuu--CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38551 0.69 0.814399
Target:  5'- -gCGCCGGCGCgcggccaugcGGCGGgUUGa -3'
miRNA:   3'- gaGCGGUCGCGauauuu----CCGCCgAAC- -5'
23586 3' -53.8 NC_005261.1 + 71555 0.69 0.81709
Target:  5'- aUCGCCgccgaGGCGCUGgggcugcucgcggaGGAGGCGGCc-- -3'
miRNA:   3'- gAGCGG-----UCGCGAUa-------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 74780 0.69 0.822422
Target:  5'- cCUCGCgGGCGCUcgGcGGGcGCGGCc-- -3'
miRNA:   3'- -GAGCGgUCGCGAuaU-UUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 128254 0.69 0.822422
Target:  5'- -gCGCCgaGGCGCguccgggAGGGGCgGGCUUGc -3'
miRNA:   3'- gaGCGG--UCGCGaua----UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 69757 0.69 0.822422
Target:  5'- --gGCgAGCGCg--GGGGGCGGCg-- -3'
miRNA:   3'- gagCGgUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 104568 0.69 0.822422
Target:  5'- gUCGcCCAGCGCU--GAGGGCuGCg-- -3'
miRNA:   3'- gAGC-GGUCGCGAuaUUUCCGcCGaac -5'
23586 3' -53.8 NC_005261.1 + 23737 0.69 0.822422
Target:  5'- -gCGCCgaGGCGCguccgggAGGGGCgGGCUUGc -3'
miRNA:   3'- gaGCGG--UCGCGaua----UUUCCG-CCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.