miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 19935 0.69 0.822422
Target:  5'- cCUCGCUAGCGUccUGggcggggguGGGGCGGCc-- -3'
miRNA:   3'- -GAGCGGUCGCG--AUau-------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 62115 0.69 0.827687
Target:  5'- -gCGCCGGCGCggcgcgguGGCGGUUc- -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 134847 0.69 0.83116
Target:  5'- -gUGCCGGCGCggcu--GGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 90221 0.69 0.83116
Target:  5'- gCUCuGCCGGCGggGcGAcGGCGGCUg- -3'
miRNA:   3'- -GAG-CGGUCGCgaUaUUuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 30330 0.69 0.83116
Target:  5'- -gUGCCGGCGCggcu--GGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 13858 0.69 0.83116
Target:  5'- gUCGCCGGCGUcgcc--GGCGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 126952 0.69 0.83116
Target:  5'- -gCGCCgGGCGCg---GGGGCGGCa-- -3'
miRNA:   3'- gaGCGG-UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 72581 0.69 0.834601
Target:  5'- -gCGCCGGCGCgcgccagaggcgAGAGGCGGagUGg -3'
miRNA:   3'- gaGCGGUCGCGaua---------UUUCCGCCgaAC- -5'
23586 3' -53.8 NC_005261.1 + 71280 0.69 0.839704
Target:  5'- -gCGCCAGCaGCUu--GAGGUGGUa-- -3'
miRNA:   3'- gaGCGGUCG-CGAuauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79458 0.69 0.839704
Target:  5'- gCUgGCCGGCGCgcUGGGGGC-GCUc- -3'
miRNA:   3'- -GAgCGGUCGCGauAUUUCCGcCGAac -5'
23586 3' -53.8 NC_005261.1 + 95055 0.68 0.845566
Target:  5'- cCUCGCCGGCGgcgccguaucgcgcCgcgAUGucGGCGGCg-- -3'
miRNA:   3'- -GAGCGGUCGC--------------Ga--UAUuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 57945 0.68 0.848047
Target:  5'- -aCGCCAcgcacGUGCUGUc-GGGCGGCcUGg -3'
miRNA:   3'- gaGCGGU-----CGCGAUAuuUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 67079 0.68 0.848047
Target:  5'- gCUCGCUcgggcgguccauGGCGCgacgcgGUGcGGGCGGCg-- -3'
miRNA:   3'- -GAGCGG------------UCGCGa-----UAUuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 82859 0.68 0.848047
Target:  5'- gUUGCCAGCG-----AAGGCGGCg-- -3'
miRNA:   3'- gAGCGGUCGCgauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 37178 0.68 0.848047
Target:  5'- -gCGCCugGGCGCUGcu--GGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 97811 0.68 0.848047
Target:  5'- -cCGCCGGCGCccccgcAGAcGGCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGaua---UUU-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 83184 0.68 0.855376
Target:  5'- gCUCGCCGgccccgcgcagcuGCGCgggGccGGCGGCUa- -3'
miRNA:   3'- -GAGCGGU-------------CGCGauaUuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 72220 0.68 0.855376
Target:  5'- -gCGCCGGCGgUggcgcgcGUAAAGGCGGaCcUGg -3'
miRNA:   3'- gaGCGGUCGCgA-------UAUUUCCGCC-GaAC- -5'
23586 3' -53.8 NC_005261.1 + 127888 0.68 0.85618
Target:  5'- -gCGCCGGCGCccgucGGGCccgggccugGGCUUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCG---------CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 87361 0.68 0.85618
Target:  5'- -gCGCCAGCGCggcGAAGGCgccgaccugGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCG---------CCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.