Results 101 - 120 of 215 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 87361 | 0.68 | 0.85618 |
Target: 5'- -gCGCCAGCGCggcGAAGGCgccgaccugGGCg-- -3' miRNA: 3'- gaGCGGUCGCGauaUUUCCG---------CCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 68696 | 0.68 | 0.864096 |
Target: 5'- --gGCCGGCGCggacGAcGGCGGCg-- -3' miRNA: 3'- gagCGGUCGCGaua-UUuCCGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 77447 | 0.68 | 0.864096 |
Target: 5'- uCUCGgCGGUGCUGcgcgcGGCGGCg-- -3' miRNA: 3'- -GAGCgGUCGCGAUauuu-CCGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 106160 | 0.68 | 0.871789 |
Target: 5'- cCUCGCCGcuccGCGCUAauacuAGGgGGCg-- -3' miRNA: 3'- -GAGCGGU----CGCGAUauu--UCCgCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 20484 | 0.68 | 0.871789 |
Target: 5'- --aGUCGGCGUUG--GGGGCGGCg-- -3' miRNA: 3'- gagCGGUCGCGAUauUUCCGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 94385 | 0.68 | 0.871789 |
Target: 5'- aUgGCCAGCGCggc---GGCGGCc-- -3' miRNA: 3'- gAgCGGUCGCGauauuuCCGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 2441 | 0.68 | 0.871789 |
Target: 5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3' miRNA: 3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 51197 | 0.68 | 0.871789 |
Target: 5'- gCUCGCCAcgcccccgggcGCGCUGcugcuGGGCGcGCUa- -3' miRNA: 3'- -GAGCGGU-----------CGCGAUauu--UCCGC-CGAac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 41635 | 0.68 | 0.871789 |
Target: 5'- cCUCGgCGaccuugagguGCGC-GUGGAGGCGGCUc- -3' miRNA: 3'- -GAGCgGU----------CGCGaUAUUUCCGCCGAac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 58272 | 0.68 | 0.871789 |
Target: 5'- gCUCGCC-GCGCUcacGGGGcCGGCg-- -3' miRNA: 3'- -GAGCGGuCGCGAuauUUCC-GCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 40017 | 0.68 | 0.871789 |
Target: 5'- -cCGCC-GCGCUGccguGGCGGCg-- -3' miRNA: 3'- gaGCGGuCGCGAUauuuCCGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 39915 | 0.68 | 0.871789 |
Target: 5'- -gCGCC-GCGCUGgc--GGCGGCg-- -3' miRNA: 3'- gaGCGGuCGCGAUauuuCCGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 106958 | 0.68 | 0.871789 |
Target: 5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3' miRNA: 3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 69571 | 0.68 | 0.871789 |
Target: 5'- -aCGCCGGCgGCgc---GGGCGGCggUGa -3' miRNA: 3'- gaGCGGUCG-CGauauuUCCGCCGa-AC- -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 55403 | 0.68 | 0.871789 |
Target: 5'- gCUUGCC-GCGCgg-GAGGcGCGGCa-- -3' miRNA: 3'- -GAGCGGuCGCGauaUUUC-CGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 64468 | 0.68 | 0.871789 |
Target: 5'- --gGCCAGCGCcucGUAGAaGCGGCcgUGg -3' miRNA: 3'- gagCGGUCGCGa--UAUUUcCGCCGa-AC- -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 88955 | 0.68 | 0.877778 |
Target: 5'- cCUCgGCCAGCGCgcggcucGGgGGCUa- -3' miRNA: 3'- -GAG-CGGUCGCGauauuu-CCgCCGAac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 76129 | 0.68 | 0.879251 |
Target: 5'- -gCGCCGGCGCccgucGUGGAggucguGGCGGCg-- -3' miRNA: 3'- gaGCGGUCGCGa----UAUUU------CCGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 134693 | 0.68 | 0.879251 |
Target: 5'- -cCGCC-GCGCUGcgcgccGAGGCGGCc-- -3' miRNA: 3'- gaGCGGuCGCGAUau----UUCCGCCGaac -5' |
|||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 20852 | 0.68 | 0.879251 |
Target: 5'- -cCGCCgaagcAGCGCgccuccagGAGGGCGGcCUUGc -3' miRNA: 3'- gaGCGG-----UCGCGaua-----UUUCCGCC-GAAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home