miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 32284 0.66 0.924665
Target:  5'- -cCGCUGGUGCUG--GAGGCgGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 2670 0.66 0.924665
Target:  5'- -cCGCC-GCGCUGgGGAcccGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUaUUU---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 107187 0.66 0.924665
Target:  5'- -cCGCC-GCGCUGgGGAcccGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUaUUU---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 136801 0.66 0.924665
Target:  5'- -cCGCUGGUGCUG--GAGGCgGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 87057 0.66 0.924665
Target:  5'- gUCGCCAGCGCguucaUAUGAugcgccgccgcaGGGCcccgggGGCUUu -3'
miRNA:   3'- gAGCGGUCGCG-----AUAUU------------UCCG------CCGAAc -5'
23586 3' -53.8 NC_005261.1 + 81371 0.66 0.924665
Target:  5'- -gCGCCAGCGCgauca--GCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGauauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 26570 0.66 0.923539
Target:  5'- -cCGCCaccgcGGCGCgggagggcugGGAGGCGGCg-- -3'
miRNA:   3'- gaGCGG-----UCGCGaua-------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 91726 0.66 0.922972
Target:  5'- gCUCGCCgcggcgggcuucgcGGCGCUcacgccGGCGGCg-- -3'
miRNA:   3'- -GAGCGG--------------UCGCGAuauuu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 35778 0.67 0.918932
Target:  5'- -gCGCCuGCGCgccgAGgccGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGaua-UU---UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 112917 0.67 0.918932
Target:  5'- -cUGCguGCGCgagggcGAGGGCGGCg-- -3'
miRNA:   3'- gaGCGguCGCGaua---UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 90829 0.67 0.918932
Target:  5'- -cCGCguGUGCacgGGGGGCGGCg-- -3'
miRNA:   3'- gaGCGguCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 27901 0.67 0.918932
Target:  5'- -gCGCgCAGCGCguccgcGGCGGCg-- -3'
miRNA:   3'- gaGCG-GUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 85526 0.67 0.918932
Target:  5'- gUCGCCGuccaugucGCGCgc---GGGCGGCUc- -3'
miRNA:   3'- gAGCGGU--------CGCGauauuUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 123903 0.67 0.918932
Target:  5'- --gGCCGcCGCUGUGGGGuGCGGCc-- -3'
miRNA:   3'- gagCGGUcGCGAUAUUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 101220 0.67 0.918932
Target:  5'- -cCGCCgcAGCGCguc-GAGGUGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 63129 0.67 0.918932
Target:  5'- gCUCcCCGGUGCcg-GGGGGCuGCUUGa -3'
miRNA:   3'- -GAGcGGUCGCGauaUUUCCGcCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 89986 0.67 0.918932
Target:  5'- uUgGCCccGCGCUGcGGGGGCGGUa-- -3'
miRNA:   3'- gAgCGGu-CGCGAUaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 25038 0.67 0.918932
Target:  5'- aCUCGCaCAGCGUggcgcuGGUGGCc-- -3'
miRNA:   3'- -GAGCG-GUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 43202 0.67 0.917754
Target:  5'- -gCGCCgAGCGCcgccggcGGCGGCUUu -3'
miRNA:   3'- gaGCGG-UCGCGauauuu-CCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 78538 0.67 0.912943
Target:  5'- -cUGCCcggAGCGCgugcuggccGAGGGCGGCUUc -3'
miRNA:   3'- gaGCGG---UCGCGaua------UUUCCGCCGAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.