miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 75671 0.67 0.912943
Target:  5'- -gCGCCggGGCGC-AUGcuGGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGaUAUuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 78828 0.67 0.912943
Target:  5'- -gCGCCGGCGCc-----GGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 64500 0.67 0.912943
Target:  5'- -gCGCgGGUGCUcgGGgcccgcGGGCGGCUc- -3'
miRNA:   3'- gaGCGgUCGCGAuaUU------UCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 128637 0.67 0.912943
Target:  5'- --aGCCGGCugGUUAaucuaaacaUGAGGGCGGCUg- -3'
miRNA:   3'- gagCGGUCG--CGAU---------AUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 119787 0.67 0.912943
Target:  5'- gUCGCguaccgCAGCGCggagcuGGGCGGCa-- -3'
miRNA:   3'- gAGCG------GUCGCGauauu-UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 47495 0.67 0.906701
Target:  5'- -gCGCCAGCGCcuc-AGGcGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 63769 0.67 0.906701
Target:  5'- -aCGCC-GCGCc--GGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 39992 0.67 0.906701
Target:  5'- -cCGCCGGCGUgcGUGAAGGCGuacgaGCa-- -3'
miRNA:   3'- gaGCGGUCGCGa-UAUUUCCGC-----CGaac -5'
23586 3' -53.8 NC_005261.1 + 88028 0.67 0.906701
Target:  5'- --gGCCGGCGgUGccUGGGGGCGGUc-- -3'
miRNA:   3'- gagCGGUCGCgAU--AUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38304 0.67 0.906701
Target:  5'- -cCGCCugAGCGCgc--AGGGCGGCc-- -3'
miRNA:   3'- gaGCGG--UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38387 0.67 0.906701
Target:  5'- --gGCCGGUGCcgcu-GGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 103844 0.67 0.902835
Target:  5'- gCUCGCCcuuGCGCgcgagccgcGGCGGCg-- -3'
miRNA:   3'- -GAGCGGu--CGCGauauuu---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52971 0.67 0.900868
Target:  5'- -gCGCCGGUGCggcgccggcaggcGGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGaua----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 35835 0.67 0.900207
Target:  5'- --aGCuCGGCGCagaAAAGGCGGCg-- -3'
miRNA:   3'- gagCG-GUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 2790 0.67 0.900207
Target:  5'- -gCGCCcGCGCcgccuGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 18726 0.67 0.900207
Target:  5'- --gGCCGcGUGCUGUuggcGGGCGGCg-- -3'
miRNA:   3'- gagCGGU-CGCGAUAuu--UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 74224 0.67 0.893465
Target:  5'- gCUCaCCuacGCGCUGau-GGGCGGCUa- -3'
miRNA:   3'- -GAGcGGu--CGCGAUauuUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 26318 0.67 0.893465
Target:  5'- --gGCCgAGCGCgcacAGGGCGGCg-- -3'
miRNA:   3'- gagCGG-UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 108598 0.67 0.893465
Target:  5'- cCUCGCCcacgggcaccAGCGCcuc--GGGCGGCa-- -3'
miRNA:   3'- -GAGCGG----------UCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20504 0.67 0.893465
Target:  5'- -gCGCCAGCGCgc----GGCcGCUUGc -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGcCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.