miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 20504 0.67 0.893465
Target:  5'- -gCGCCAGCGCgc----GGCcGCUUGc -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGcCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 88187 0.68 0.889302
Target:  5'- uCUCGCggCGGCGCUGcaccgucgcgcGGCGGCUg- -3'
miRNA:   3'- -GAGCG--GUCGCGAUauuu-------CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 4626 0.68 0.889302
Target:  5'- -gCGCCAGCGCgagGUGGgccgugagcagcgccAGcGCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGa--UAUU---------------UC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 124577 0.68 0.886478
Target:  5'- gCUCGCgCAccacGCGCUGaucguuGGGCGGCg-- -3'
miRNA:   3'- -GAGCG-GU----CGCGAUauu---UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 72622 0.68 0.886478
Target:  5'- --gGCgGGCGC---AGGGGCGGCUUu -3'
miRNA:   3'- gagCGgUCGCGauaUUUCCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 87547 0.68 0.886478
Target:  5'- gUCGCUGGCGCggauguUAUAcGGcGCGGaCUUGg -3'
miRNA:   3'- gAGCGGUCGCG------AUAUuUC-CGCC-GAAC- -5'
23586 3' -53.8 NC_005261.1 + 121423 0.68 0.886478
Target:  5'- -cCGCCGcCGCUAc-GGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUcGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 99510 0.68 0.886478
Target:  5'- gCUCuGCgGGCGCUG--GGGGCgcgggccuggccGGCUUGg -3'
miRNA:   3'- -GAG-CGgUCGCGAUauUUCCG------------CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 82824 0.68 0.886478
Target:  5'- --aGCCGGCGCgccGUAGAugcagucucagcGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGa--UAUUU------------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 126042 0.68 0.886478
Target:  5'- -gCGgCGGCGCUgcAUGGuGGCGGCg-- -3'
miRNA:   3'- gaGCgGUCGCGA--UAUUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 98863 0.68 0.886478
Target:  5'- cCUCcCCGGcCGCcgauGAGGCGGCUg- -3'
miRNA:   3'- -GAGcGGUC-GCGauauUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 88812 0.68 0.886478
Target:  5'- -aCGCCGGCgGCg----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 75547 0.68 0.883616
Target:  5'- -gCGCCGGCGCgugcagcuGGCGGacgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCga-AC- -5'
23586 3' -53.8 NC_005261.1 + 20852 0.68 0.879251
Target:  5'- -cCGCCgaagcAGCGCgccuccagGAGGGCGGcCUUGc -3'
miRNA:   3'- gaGCGG-----UCGCGaua-----UUUCCGCC-GAAC- -5'
23586 3' -53.8 NC_005261.1 + 35033 0.68 0.879251
Target:  5'- gUCGCUGGCGCgccgcccUAAcGGCGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGau-----AUUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 76129 0.68 0.879251
Target:  5'- -gCGCCGGCGCccgucGUGGAggucguGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa----UAUUU------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134693 0.68 0.879251
Target:  5'- -cCGCC-GCGCUGcgcgccGAGGCGGCc-- -3'
miRNA:   3'- gaGCGGuCGCGAUau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 60099 0.68 0.879251
Target:  5'- -gCGCCGGgGCggcGGGGGUGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 88955 0.68 0.877778
Target:  5'- cCUCgGCCAGCGCgcggcucGGgGGCUa- -3'
miRNA:   3'- -GAG-CGGUCGCGauauuu-CCgCCGAac -5'
23586 3' -53.8 NC_005261.1 + 40017 0.68 0.871789
Target:  5'- -cCGCC-GCGCUGccguGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.