miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 440 0.72 0.674518
Target:  5'- -gCGCCGGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 2262 0.72 0.659767
Target:  5'- -cCGCCGGCGCUcguccucgccGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAuauu------UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 2441 0.68 0.871789
Target:  5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3'
miRNA:   3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 2670 0.66 0.924665
Target:  5'- -cCGCC-GCGCUGgGGAcccGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUaUUU---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 2790 0.67 0.900207
Target:  5'- -gCGCCcGCGCcgccuGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 3508 0.66 0.932263
Target:  5'- -cCGCCAGCGCggccgccuccAGcGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauu-----UC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 3925 0.71 0.736575
Target:  5'- -gCuCCAGCGCggcGAAGGCGGCgacgUGg -3'
miRNA:   3'- gaGcGGUCGCGauaUUUCCGCCGa---AC- -5'
23586 3' -53.8 NC_005261.1 + 4244 0.71 0.695457
Target:  5'- -cCGCCGGgGCUGaGGAGGuCGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGAUaUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 4626 0.68 0.889302
Target:  5'- -gCGCCAGCGCgagGUGGgccgugagcagcgccAGcGCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGa--UAUU---------------UC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 5257 0.66 0.930143
Target:  5'- gUCGCgGuGCGCggcgacGAAGGCGGCc-- -3'
miRNA:   3'- gAGCGgU-CGCGaua---UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 5618 0.74 0.569049
Target:  5'- -gCGCCAGCGCccccu-GGCGGCUc- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 5691 0.69 0.804399
Target:  5'- cCUCGCCcucGCGCgc-GAGGGCGcGCUc- -3'
miRNA:   3'- -GAGCGGu--CGCGauaUUUCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 5771 0.77 0.394351
Target:  5'- -cUGCCGGCGCg--GAGGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 8480 0.71 0.71617
Target:  5'- gUCGCCGGUGCU--GAAGGCcgGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGAuaUUUCCG--CCGaac -5'
23586 3' -53.8 NC_005261.1 + 13858 0.69 0.83116
Target:  5'- gUCGCCGGCGUcgcc--GGCGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 15843 0.66 0.940333
Target:  5'- aUCGCgAGCGCgcUAGAGgacgaggucGCGGCa-- -3'
miRNA:   3'- gAGCGgUCGCGauAUUUC---------CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 16072 0.7 0.766429
Target:  5'- --aGCCGGCGCgUGUAGAcgaaguacgcGGCGGCa-- -3'
miRNA:   3'- gagCGGUCGCG-AUAUUU----------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 16297 0.66 0.945047
Target:  5'- --aGCUGGCGCUGcUGAAgagcguGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAU-AUUU------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 16398 0.66 0.943191
Target:  5'- -gCGCCGGUGCgccgccgcGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 16597 0.73 0.59317
Target:  5'- gCUCGCCGGCgGCggccgccgagcggcgGGAGGCGGCg-- -3'
miRNA:   3'- -GAGCGGUCG-CGaua------------UUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.