miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 17102 0.69 0.813499
Target:  5'- -gUGCCAGCGCUcgauguaguuGUAucgcGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGA----------UAUuu--CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 18726 0.67 0.900207
Target:  5'- --gGCCGcGUGCUGUuggcGGGCGGCg-- -3'
miRNA:   3'- gagCGGU-CGCGAUAuu--UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 18866 0.72 0.674518
Target:  5'- uUCgGCCGGgGUUGggGAGGGCgGGCUUGg -3'
miRNA:   3'- gAG-CGGUCgCGAUa-UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 19548 0.73 0.632269
Target:  5'- -cCGCCAGCGCcGUGGggagcgccagcGGGCGGUUg- -3'
miRNA:   3'- gaGCGGUCGCGaUAUU-----------UCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 19935 0.69 0.822422
Target:  5'- cCUCGCUAGCGUccUGggcggggguGGGGCGGCc-- -3'
miRNA:   3'- -GAGCGGUCGCG--AUau-------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20188 0.66 0.943191
Target:  5'- -cCGCCAGCGCgggcgucGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20484 0.68 0.871789
Target:  5'- --aGUCGGCGUUG--GGGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20504 0.67 0.893465
Target:  5'- -gCGCCAGCGCgc----GGCcGCUUGc -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGcCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 20852 0.68 0.879251
Target:  5'- -cCGCCgaagcAGCGCgccuccagGAGGGCGGcCUUGc -3'
miRNA:   3'- gaGCGG-----UCGCGaua-----UUUCCGCC-GAAC- -5'
23586 3' -53.8 NC_005261.1 + 20930 0.69 0.813499
Target:  5'- -gCGCCGGgGCUGggcucGAGGGCGGgCUc- -3'
miRNA:   3'- gaGCGGUCgCGAUa----UUUCCGCC-GAac -5'
23586 3' -53.8 NC_005261.1 + 22327 0.71 0.712049
Target:  5'- --gGCCGGCGCUGacgacggcggggaGGAGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUa------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 23612 0.66 0.937383
Target:  5'- gUCGCCgccgcugccggGGCGCggcgggggucGGGCGGCUg- -3'
miRNA:   3'- gAGCGG-----------UCGCGauauu-----UCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 23737 0.69 0.822422
Target:  5'- -gCGCCgaGGCGCguccgggAGGGGCgGGCUUGc -3'
miRNA:   3'- gaGCGG--UCGCGaua----UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 23793 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 23850 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 25038 0.67 0.918932
Target:  5'- aCUCGCaCAGCGUggcgcuGGUGGCc-- -3'
miRNA:   3'- -GAGCG-GUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 26318 0.67 0.893465
Target:  5'- --gGCCgAGCGCgcacAGGGCGGCg-- -3'
miRNA:   3'- gagCGG-UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 26570 0.66 0.923539
Target:  5'- -cCGCCaccgcGGCGCgggagggcugGGAGGCGGCg-- -3'
miRNA:   3'- gaGCGG-----UCGCGaua-------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 27901 0.67 0.918932
Target:  5'- -gCGCgCAGCGCguccgcGGCGGCg-- -3'
miRNA:   3'- gaGCG-GUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 29957 0.71 0.705847
Target:  5'- -cCGCgaGGCGCUA--GAGGCGGCg-- -3'
miRNA:   3'- gaGCGg-UCGCGAUauUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.