miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 37848 0.72 0.674518
Target:  5'- -aCGgCGGCGUgGUGGAGGCGGCc-- -3'
miRNA:   3'- gaGCgGUCGCGaUAUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38117 0.66 0.942248
Target:  5'- --gGCCGGUGCgggcgccgcuGGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGauauu-----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38261 0.75 0.487607
Target:  5'- -aCGCCAGC-CUGggcUGGGGGCGGCUg- -3'
miRNA:   3'- gaGCGGUCGcGAU---AUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 38304 0.67 0.906701
Target:  5'- -cCGCCugAGCGCgc--AGGGCGGCc-- -3'
miRNA:   3'- gaGCGG--UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38387 0.67 0.906701
Target:  5'- --gGCCGGUGCcgcu-GGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38551 0.69 0.814399
Target:  5'- -gCGCCGGCGCgcggccaugcGGCGGgUUGa -3'
miRNA:   3'- gaGCGGUCGCGauauuu----CCGCCgAAC- -5'
23586 3' -53.8 NC_005261.1 + 39915 0.68 0.871789
Target:  5'- -gCGCC-GCGCUGgc--GGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 39992 0.67 0.906701
Target:  5'- -cCGCCGGCGUgcGUGAAGGCGuacgaGCa-- -3'
miRNA:   3'- gaGCGGUCGCGa-UAUUUCCGC-----CGaac -5'
23586 3' -53.8 NC_005261.1 + 40017 0.68 0.871789
Target:  5'- -cCGCC-GCGCUGccguGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 41635 0.68 0.871789
Target:  5'- cCUCGgCGaccuugagguGCGC-GUGGAGGCGGCUc- -3'
miRNA:   3'- -GAGCgGU----------CGCGaUAUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 43168 0.71 0.736575
Target:  5'- gCUCGCgGGCGUgcauggcgGAGGGCGGUcUGc -3'
miRNA:   3'- -GAGCGgUCGCGaua-----UUUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 43187 0.66 0.930143
Target:  5'- -cCGCCGGCGaggcAGAGGUGGUg-- -3'
miRNA:   3'- gaGCGGUCGCgauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 43202 0.67 0.917754
Target:  5'- -gCGCCgAGCGCcgccggcGGCGGCUUu -3'
miRNA:   3'- gaGCGG-UCGCGauauuu-CCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 43617 0.66 0.945047
Target:  5'- -gCGCCGGCgGCggcGAGGGCGcGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauaUUUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 44396 0.69 0.813499
Target:  5'- gCUCGgCGGCGCcgccc-GGCGGCUg- -3'
miRNA:   3'- -GAGCgGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 47495 0.67 0.906701
Target:  5'- -gCGCCAGCGCcuc-AGGcGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 51197 0.68 0.871789
Target:  5'- gCUCGCCAcgcccccgggcGCGCUGcugcuGGGCGcGCUa- -3'
miRNA:   3'- -GAGCGGU-----------CGCGAUauu--UCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 52587 0.66 0.945047
Target:  5'- -gCGgCGGCGCUucAUGGAccugcucaacGGCGGCUUc -3'
miRNA:   3'- gaGCgGUCGCGA--UAUUU----------CCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 52839 0.7 0.786659
Target:  5'- gCUCGCgGGCGCcuaccagaagcccGAGGGCGGCg-- -3'
miRNA:   3'- -GAGCGgUCGCGaua----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52971 0.67 0.900868
Target:  5'- -gCGCCGGUGCggcgccggcaggcGGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGaua----------UUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.