miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 53020 0.75 0.517587
Target:  5'- gCUCGCCAGCGCUucc---GCGGCg-- -3'
miRNA:   3'- -GAGCGGUCGCGAuauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 53109 0.66 0.935365
Target:  5'- -gCGCCgcGGCGCUGcGcgccgccaacAGGGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGAUaU----------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 54744 0.66 0.940333
Target:  5'- -gCGCCuGGCGCUcuac-GGCGGCg-- -3'
miRNA:   3'- gaGCGG-UCGCGAuauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 55403 0.68 0.871789
Target:  5'- gCUUGCC-GCGCgg-GAGGcGCGGCa-- -3'
miRNA:   3'- -GAGCGGuCGCGauaUUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 57945 0.68 0.848047
Target:  5'- -aCGCCAcgcacGUGCUGUc-GGGCGGCcUGg -3'
miRNA:   3'- gaGCGGU-----CGCGAUAuuUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 58272 0.68 0.871789
Target:  5'- gCUCGCC-GCGCUcacGGGGcCGGCg-- -3'
miRNA:   3'- -GAGCGGuCGCGAuauUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 58465 0.7 0.766429
Target:  5'- aCUCGCCgGGCGCgUAUGAgccgcAGGcCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCG-AUAUU-----UCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 58790 0.71 0.746637
Target:  5'- --gGCCAGCGCgcgcagGAAGGcCGGCa-- -3'
miRNA:   3'- gagCGGUCGCGaua---UUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 59417 0.7 0.776138
Target:  5'- -gCGCCGGCGCUGUcgc-GCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGAUAuuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 59481 0.66 0.930143
Target:  5'- -gCGCCGGCGCggccgccgcgccagcGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuu---------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 60099 0.68 0.879251
Target:  5'- -gCGCCGGgGCggcGGGGGUGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 61219 0.69 0.804399
Target:  5'- -gCGUCGGCGag--GAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCgauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 61370 0.71 0.695457
Target:  5'- cCUCGCCgGGCGCc----AGGCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 62115 0.69 0.827687
Target:  5'- -gCGCCGGCGCggcgcgguGGCGGUUc- -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 62240 0.69 0.804399
Target:  5'- -gCGuCCAGCGC---GAGGGCGGCc-- -3'
miRNA:   3'- gaGC-GGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 63029 0.69 0.804399
Target:  5'- -gCGCCGGCGCccgcggcGAGGCGGUc-- -3'
miRNA:   3'- gaGCGGUCGCGauau---UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 63129 0.67 0.918932
Target:  5'- gCUCcCCGGUGCcg-GGGGGCuGCUUGa -3'
miRNA:   3'- -GAGcGGUCGCGauaUUUCCGcCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 63769 0.67 0.906701
Target:  5'- -aCGCC-GCGCc--GGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 64468 0.68 0.871789
Target:  5'- --gGCCAGCGCcucGUAGAaGCGGCcgUGg -3'
miRNA:   3'- gagCGGUCGCGa--UAUUUcCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 64500 0.67 0.912943
Target:  5'- -gCGCgGGUGCUcgGGgcccgcGGGCGGCUc- -3'
miRNA:   3'- gaGCGgUCGCGAuaUU------UCCGCCGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.